Hb_003166_040

Information

Type -
Description -
Location Contig3166: 44024-46272
Sequence    

Annotation

kegg
ID rcu:RCOM_1154750
description Indole-3-acetic acid-amido synthetase GH3.3, putative
nr
ID XP_012079335.1
description PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
swissprot
ID O22190
description Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1
trembl
ID A0A067K6Z9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12482 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003166_040 0.0 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
2 Hb_127743_030 0.0296732016 - - amino acid transporter, putative [Ricinus communis]
3 Hb_058526_010 0.0471551186 - - -
4 Hb_027288_010 0.0689059766 - - mutt domain protein, putative [Ricinus communis]
5 Hb_007483_030 0.0744931221 - - -
6 Hb_002374_110 0.0756796689 - - PREDICTED: uncharacterized protein LOC105638965 [Jatropha curcas]
7 Hb_007432_050 0.0813156537 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108 [Jatropha curcas]
8 Hb_007747_030 0.0853319157 - - PREDICTED: WD repeat-containing protein LWD2-like [Jatropha curcas]
9 Hb_003052_070 0.1048431142 - - PREDICTED: peroxidase 11 [Jatropha curcas]
10 Hb_002272_160 0.1069250288 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
11 Hb_006919_010 0.107021809 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]
12 Hb_000567_310 0.1098109645 - - Miraculin precursor, putative [Ricinus communis]
13 Hb_004021_100 0.1117839291 - - -
14 Hb_000407_110 0.1121757381 - - ripening-induced ACC oxidase [Carica papaya]
15 Hb_000288_140 0.1143237364 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 35 [Jatropha curcas]
16 Hb_003786_060 0.1146969776 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
17 Hb_000441_170 0.1265657404 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
18 Hb_006006_070 0.1276682656 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_001609_080 0.1288392694 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
20 Hb_003581_240 0.1305889576 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003166_040 Hb_003166_040 Hb_127743_030 Hb_127743_030 Hb_003166_040--Hb_127743_030 Hb_058526_010 Hb_058526_010 Hb_003166_040--Hb_058526_010 Hb_027288_010 Hb_027288_010 Hb_003166_040--Hb_027288_010 Hb_007483_030 Hb_007483_030 Hb_003166_040--Hb_007483_030 Hb_002374_110 Hb_002374_110 Hb_003166_040--Hb_002374_110 Hb_007432_050 Hb_007432_050 Hb_003166_040--Hb_007432_050 Hb_127743_030--Hb_058526_010 Hb_127743_030--Hb_002374_110 Hb_127743_030--Hb_007432_050 Hb_127743_030--Hb_027288_010 Hb_127743_030--Hb_007483_030 Hb_004055_080 Hb_004055_080 Hb_058526_010--Hb_004055_080 Hb_007747_030 Hb_007747_030 Hb_058526_010--Hb_007747_030 Hb_058526_010--Hb_007483_030 Hb_058526_010--Hb_002374_110 Hb_027288_010--Hb_007483_030 Hb_003052_070 Hb_003052_070 Hb_027288_010--Hb_003052_070 Hb_027288_010--Hb_007747_030 Hb_000567_310 Hb_000567_310 Hb_027288_010--Hb_000567_310 Hb_002272_160 Hb_002272_160 Hb_027288_010--Hb_002272_160 Hb_007483_030--Hb_007747_030 Hb_007483_030--Hb_003052_070 Hb_000407_110 Hb_000407_110 Hb_007483_030--Hb_000407_110 Hb_007483_030--Hb_002272_160 Hb_006919_010 Hb_006919_010 Hb_002374_110--Hb_006919_010 Hb_002374_110--Hb_007483_030 Hb_002374_110--Hb_027288_010 Hb_022998_010 Hb_022998_010 Hb_007432_050--Hb_022998_010 Hb_000649_030 Hb_000649_030 Hb_007432_050--Hb_000649_030 Hb_007432_050--Hb_002374_110 Hb_007432_050--Hb_058526_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.6615 0.364301 0.311858 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.50283 0

CAGE analysis