Hb_058526_010

Information

Type -
Description -
Location Contig58526: 248-725
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_058526_010 0.0 - - -
2 Hb_003166_040 0.0471551186 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
3 Hb_127743_030 0.0569043694 - - amino acid transporter, putative [Ricinus communis]
4 Hb_004055_080 0.0854980548 - - calmodulin binding protein, putative [Ricinus communis]
5 Hb_007747_030 0.091184317 - - PREDICTED: WD repeat-containing protein LWD2-like [Jatropha curcas]
6 Hb_007483_030 0.0951073061 - - -
7 Hb_002374_110 0.0952368685 - - PREDICTED: uncharacterized protein LOC105638965 [Jatropha curcas]
8 Hb_004021_100 0.0986470625 - - -
9 Hb_111693_010 0.0988910584 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
10 Hb_027288_010 0.0999981897 - - mutt domain protein, putative [Ricinus communis]
11 Hb_000288_140 0.1058803761 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 35 [Jatropha curcas]
12 Hb_007432_050 0.1096856645 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108 [Jatropha curcas]
13 Hb_003786_060 0.1137883276 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
14 Hb_000407_110 0.1170454975 - - ripening-induced ACC oxidase [Carica papaya]
15 Hb_000220_170 0.1178986986 - - -
16 Hb_001473_100 0.1179145503 - - chalcone synthase 1 [Jatropha curcas]
17 Hb_001609_080 0.1184856738 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
18 Hb_006919_010 0.1238762908 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]
19 Hb_003052_070 0.1259050747 - - PREDICTED: peroxidase 11 [Jatropha curcas]
20 Hb_005653_100 0.1286653942 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]

Gene co-expression network

sample Hb_058526_010 Hb_058526_010 Hb_003166_040 Hb_003166_040 Hb_058526_010--Hb_003166_040 Hb_127743_030 Hb_127743_030 Hb_058526_010--Hb_127743_030 Hb_004055_080 Hb_004055_080 Hb_058526_010--Hb_004055_080 Hb_007747_030 Hb_007747_030 Hb_058526_010--Hb_007747_030 Hb_007483_030 Hb_007483_030 Hb_058526_010--Hb_007483_030 Hb_002374_110 Hb_002374_110 Hb_058526_010--Hb_002374_110 Hb_003166_040--Hb_127743_030 Hb_027288_010 Hb_027288_010 Hb_003166_040--Hb_027288_010 Hb_003166_040--Hb_007483_030 Hb_003166_040--Hb_002374_110 Hb_007432_050 Hb_007432_050 Hb_003166_040--Hb_007432_050 Hb_127743_030--Hb_002374_110 Hb_127743_030--Hb_007432_050 Hb_127743_030--Hb_027288_010 Hb_127743_030--Hb_007483_030 Hb_111693_010 Hb_111693_010 Hb_004055_080--Hb_111693_010 Hb_000220_170 Hb_000220_170 Hb_004055_080--Hb_000220_170 Hb_000029_420 Hb_000029_420 Hb_004055_080--Hb_000029_420 Hb_001473_100 Hb_001473_100 Hb_004055_080--Hb_001473_100 Hb_005653_100 Hb_005653_100 Hb_004055_080--Hb_005653_100 Hb_007747_030--Hb_007483_030 Hb_007747_030--Hb_027288_010 Hb_003052_070 Hb_003052_070 Hb_007747_030--Hb_003052_070 Hb_003786_060 Hb_003786_060 Hb_007747_030--Hb_003786_060 Hb_007747_030--Hb_003166_040 Hb_007483_030--Hb_027288_010 Hb_007483_030--Hb_003052_070 Hb_000407_110 Hb_000407_110 Hb_007483_030--Hb_000407_110 Hb_002272_160 Hb_002272_160 Hb_007483_030--Hb_002272_160 Hb_006919_010 Hb_006919_010 Hb_002374_110--Hb_006919_010 Hb_002374_110--Hb_007483_030 Hb_002374_110--Hb_027288_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.228922 0.191559 0.145604 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.03477 0

CAGE analysis