Hb_127743_030

Information

Type -
Description -
Location Contig127743: 45643-53194
Sequence    

Annotation

kegg
ID rcu:RCOM_0415150
description amino acid transporter, putative
nr
ID XP_002533727.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q9FF99
description Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=2 SV=1
trembl
ID B9T658
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0415150 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable amino acid permease 7 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127743_030 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_003166_040 0.0296732016 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
3 Hb_058526_010 0.0569043694 - - -
4 Hb_002374_110 0.0703096018 - - PREDICTED: uncharacterized protein LOC105638965 [Jatropha curcas]
5 Hb_007432_050 0.0714356555 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108 [Jatropha curcas]
6 Hb_027288_010 0.0850796418 - - mutt domain protein, putative [Ricinus communis]
7 Hb_007483_030 0.093002929 - - -
8 Hb_007747_030 0.1005042387 - - PREDICTED: WD repeat-containing protein LWD2-like [Jatropha curcas]
9 Hb_004021_100 0.1049676323 - - -
10 Hb_002272_160 0.1051946282 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
11 Hb_000288_140 0.11668606 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 35 [Jatropha curcas]
12 Hb_000567_310 0.1171189086 - - Miraculin precursor, putative [Ricinus communis]
13 Hb_003052_070 0.1173842499 - - PREDICTED: peroxidase 11 [Jatropha curcas]
14 Hb_006919_010 0.117406591 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]
15 Hb_000441_170 0.120621406 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
16 Hb_003786_060 0.1236961646 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
17 Hb_000407_110 0.1276307806 - - ripening-induced ACC oxidase [Carica papaya]
18 Hb_006006_070 0.1308264917 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_002843_010 0.1312334715 - - hypothetical protein EUGRSUZ_H04984, partial [Eucalyptus grandis]
20 Hb_001405_100 0.1347081995 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]

Gene co-expression network

sample Hb_127743_030 Hb_127743_030 Hb_003166_040 Hb_003166_040 Hb_127743_030--Hb_003166_040 Hb_058526_010 Hb_058526_010 Hb_127743_030--Hb_058526_010 Hb_002374_110 Hb_002374_110 Hb_127743_030--Hb_002374_110 Hb_007432_050 Hb_007432_050 Hb_127743_030--Hb_007432_050 Hb_027288_010 Hb_027288_010 Hb_127743_030--Hb_027288_010 Hb_007483_030 Hb_007483_030 Hb_127743_030--Hb_007483_030 Hb_003166_040--Hb_058526_010 Hb_003166_040--Hb_027288_010 Hb_003166_040--Hb_007483_030 Hb_003166_040--Hb_002374_110 Hb_003166_040--Hb_007432_050 Hb_004055_080 Hb_004055_080 Hb_058526_010--Hb_004055_080 Hb_007747_030 Hb_007747_030 Hb_058526_010--Hb_007747_030 Hb_058526_010--Hb_007483_030 Hb_058526_010--Hb_002374_110 Hb_006919_010 Hb_006919_010 Hb_002374_110--Hb_006919_010 Hb_002374_110--Hb_007483_030 Hb_002374_110--Hb_027288_010 Hb_022998_010 Hb_022998_010 Hb_007432_050--Hb_022998_010 Hb_000649_030 Hb_000649_030 Hb_007432_050--Hb_000649_030 Hb_007432_050--Hb_002374_110 Hb_007432_050--Hb_058526_010 Hb_027288_010--Hb_007483_030 Hb_003052_070 Hb_003052_070 Hb_027288_010--Hb_003052_070 Hb_027288_010--Hb_007747_030 Hb_000567_310 Hb_000567_310 Hb_027288_010--Hb_000567_310 Hb_002272_160 Hb_002272_160 Hb_027288_010--Hb_002272_160 Hb_007483_030--Hb_007747_030 Hb_007483_030--Hb_003052_070 Hb_000407_110 Hb_000407_110 Hb_007483_030--Hb_000407_110 Hb_007483_030--Hb_002272_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0146323 2.07506 1.09009 1.03183 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.36902 0

CAGE analysis