Hb_006919_010

Information

Type -
Description -
Location Contig6919: 24875-28752
Sequence    

Annotation

kegg
ID vvi:100252247
description putative wall-associated receptor kinase-like 16
nr
ID XP_010664899.1
description PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]
swissprot
ID Q9LMP1
description Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1
trembl
ID F6GSN9
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g02100 PE=4 SV=1
Gene Ontology
ID GO:0000166
description wall-associated receptor kinase-like 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54435: 25601-27309
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006919_010 0.0 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]
2 Hb_000407_110 0.0737275989 - - ripening-induced ACC oxidase [Carica papaya]
3 Hb_001609_080 0.0831058592 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
4 Hb_002374_110 0.0892417249 - - PREDICTED: uncharacterized protein LOC105638965 [Jatropha curcas]
5 Hb_002376_030 0.098228149 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_007483_030 0.1014425255 - - -
7 Hb_003166_040 0.107021809 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]
8 Hb_003581_240 0.1086245555 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
9 Hb_027288_010 0.1133501132 - - mutt domain protein, putative [Ricinus communis]
10 Hb_008080_040 0.1134100786 - - hypothetical protein EUGRSUZ_D00834 [Eucalyptus grandis]
11 Hb_007875_070 0.1137734829 - - hypothetical protein JCGZ_05017 [Jatropha curcas]
12 Hb_005653_100 0.1167469467 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
13 Hb_127743_030 0.117406591 - - amino acid transporter, putative [Ricinus communis]
14 Hb_000288_140 0.1231612799 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 35 [Jatropha curcas]
15 Hb_058526_010 0.1238762908 - - -
16 Hb_013652_010 0.1255241737 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_004586_080 0.130494721 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
18 Hb_000462_020 0.1305268491 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_008225_080 0.1327308173 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
20 Hb_020902_020 0.1368644389 - - hypothetical protein JCGZ_07820 [Jatropha curcas]

Gene co-expression network

sample Hb_006919_010 Hb_006919_010 Hb_000407_110 Hb_000407_110 Hb_006919_010--Hb_000407_110 Hb_001609_080 Hb_001609_080 Hb_006919_010--Hb_001609_080 Hb_002374_110 Hb_002374_110 Hb_006919_010--Hb_002374_110 Hb_002376_030 Hb_002376_030 Hb_006919_010--Hb_002376_030 Hb_007483_030 Hb_007483_030 Hb_006919_010--Hb_007483_030 Hb_003166_040 Hb_003166_040 Hb_006919_010--Hb_003166_040 Hb_000407_110--Hb_001609_080 Hb_000407_110--Hb_007483_030 Hb_008080_040 Hb_008080_040 Hb_000407_110--Hb_008080_040 Hb_005653_100 Hb_005653_100 Hb_000407_110--Hb_005653_100 Hb_004586_080 Hb_004586_080 Hb_000407_110--Hb_004586_080 Hb_001609_080--Hb_005653_100 Hb_020902_020 Hb_020902_020 Hb_001609_080--Hb_020902_020 Hb_000288_140 Hb_000288_140 Hb_001609_080--Hb_000288_140 Hb_111693_010 Hb_111693_010 Hb_001609_080--Hb_111693_010 Hb_127743_030 Hb_127743_030 Hb_002374_110--Hb_127743_030 Hb_002374_110--Hb_003166_040 Hb_058526_010 Hb_058526_010 Hb_002374_110--Hb_058526_010 Hb_002374_110--Hb_007483_030 Hb_027288_010 Hb_027288_010 Hb_002374_110--Hb_027288_010 Hb_002376_030--Hb_002374_110 Hb_013652_010 Hb_013652_010 Hb_002376_030--Hb_013652_010 Hb_002376_030--Hb_007483_030 Hb_002376_030--Hb_000407_110 Hb_003581_240 Hb_003581_240 Hb_002376_030--Hb_003581_240 Hb_007483_030--Hb_027288_010 Hb_007747_030 Hb_007747_030 Hb_007483_030--Hb_007747_030 Hb_003052_070 Hb_003052_070 Hb_007483_030--Hb_003052_070 Hb_007483_030--Hb_003166_040 Hb_002272_160 Hb_002272_160 Hb_007483_030--Hb_002272_160 Hb_003166_040--Hb_127743_030 Hb_003166_040--Hb_058526_010 Hb_003166_040--Hb_027288_010 Hb_007432_050 Hb_007432_050 Hb_003166_040--Hb_007432_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.961562 0.571295 0.192245 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0154006 0 3.25588 0.0326623

CAGE analysis