Hb_004586_080

Information

Type -
Description -
Location Contig4586: 93571-94527
Sequence    

Annotation

kegg
ID pop:POPTR_0002s10520g
description POPTRDRAFT_798799; hypothetical protein
nr
ID XP_002302339.2
description hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
swissprot
ID Q9LTA2
description AT-hook motif nuclear-localized protein 17 OS=Arabidopsis thaliana GN=AHL17 PE=2 SV=1
trembl
ID B9GN33
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s10520g PE=4 SV=2
Gene Ontology
ID GO:0003677
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_080 0.0 - - hypothetical protein POPTR_0002s10520g [Populus trichocarpa]
2 Hb_000327_300 0.0518109647 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
3 Hb_008080_040 0.0724746973 - - hypothetical protein EUGRSUZ_D00834 [Eucalyptus grandis]
4 Hb_001357_260 0.0911505193 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_000407_110 0.0918785104 - - ripening-induced ACC oxidase [Carica papaya]
6 Hb_007483_030 0.0963979401 - - -
7 Hb_008705_070 0.1071583782 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
8 Hb_002965_020 0.1080998511 - - hypothetical protein JCGZ_18947 [Jatropha curcas]
9 Hb_027288_010 0.1084458373 - - mutt domain protein, putative [Ricinus communis]
10 Hb_039342_030 0.1111641691 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003581_240 0.1117032063 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_000813_120 0.1150277461 - - PREDICTED: serine carboxypeptidase-like 18 [Tarenaya hassleriana]
13 Hb_001168_010 0.1177506819 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
14 Hb_002917_010 0.1189985769 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
15 Hb_016172_010 0.1190025979 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
16 Hb_000976_020 0.1197887773 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
17 Hb_003052_070 0.1205166911 - - PREDICTED: peroxidase 11 [Jatropha curcas]
18 Hb_007747_030 0.124028838 - - PREDICTED: WD repeat-containing protein LWD2-like [Jatropha curcas]
19 Hb_010839_070 0.1242792829 - - uncharacterized protein LOC100810725 [Glycine max]
20 Hb_002272_160 0.1263345103 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004586_080 Hb_004586_080 Hb_000327_300 Hb_000327_300 Hb_004586_080--Hb_000327_300 Hb_008080_040 Hb_008080_040 Hb_004586_080--Hb_008080_040 Hb_001357_260 Hb_001357_260 Hb_004586_080--Hb_001357_260 Hb_000407_110 Hb_000407_110 Hb_004586_080--Hb_000407_110 Hb_007483_030 Hb_007483_030 Hb_004586_080--Hb_007483_030 Hb_008705_070 Hb_008705_070 Hb_004586_080--Hb_008705_070 Hb_000327_300--Hb_008080_040 Hb_002965_020 Hb_002965_020 Hb_000327_300--Hb_002965_020 Hb_000327_300--Hb_000407_110 Hb_000327_300--Hb_001357_260 Hb_001168_010 Hb_001168_010 Hb_000327_300--Hb_001168_010 Hb_008080_040--Hb_000407_110 Hb_008080_040--Hb_002965_020 Hb_020902_020 Hb_020902_020 Hb_008080_040--Hb_020902_020 Hb_008080_040--Hb_001357_260 Hb_112082_030 Hb_112082_030 Hb_001357_260--Hb_112082_030 Hb_002917_010 Hb_002917_010 Hb_001357_260--Hb_002917_010 Hb_000976_020 Hb_000976_020 Hb_001357_260--Hb_000976_020 Hb_001357_260--Hb_002965_020 Hb_006919_010 Hb_006919_010 Hb_000407_110--Hb_006919_010 Hb_001609_080 Hb_001609_080 Hb_000407_110--Hb_001609_080 Hb_000407_110--Hb_007483_030 Hb_005653_100 Hb_005653_100 Hb_000407_110--Hb_005653_100 Hb_027288_010 Hb_027288_010 Hb_007483_030--Hb_027288_010 Hb_007747_030 Hb_007747_030 Hb_007483_030--Hb_007747_030 Hb_003052_070 Hb_003052_070 Hb_007483_030--Hb_003052_070 Hb_003166_040 Hb_003166_040 Hb_007483_030--Hb_003166_040 Hb_002272_160 Hb_002272_160 Hb_007483_030--Hb_002272_160 Hb_001328_110 Hb_001328_110 Hb_008705_070--Hb_001328_110 Hb_039342_030 Hb_039342_030 Hb_008705_070--Hb_039342_030 Hb_025526_090 Hb_025526_090 Hb_008705_070--Hb_025526_090 Hb_008705_070--Hb_003052_070 Hb_016172_010 Hb_016172_010 Hb_008705_070--Hb_016172_010 Hb_042664_010 Hb_042664_010 Hb_008705_070--Hb_042664_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0233597 4.8351 2.50386 0.7449 0.0234388 0.0205904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0535436 0 0 28.1082 0.171734

CAGE analysis