Hb_016172_010

Information

Type -
Description -
Location Contig16172: 14013-15012
Sequence    

Annotation

kegg
ID pop:POPTR_0019s04330g
description Germin-like protein subfamily 1 member 6 precursor
nr
ID KDP23769.1
description hypothetical protein JCGZ_23602 [Jatropha curcas]
swissprot
ID Q9FIC8
description Germin-like protein subfamily 1 member 16 OS=Arabidopsis thaliana GN=At5g39130 PE=2 SV=1
trembl
ID A0A067JW67
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23602 PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein subfamily 1 member 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016172_010 0.0 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
2 Hb_039342_030 0.0554685206 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002615_050 0.0642457634 - - ATP-binding cassette transporter, putative [Ricinus communis]
4 Hb_025526_090 0.0667308682 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
5 Hb_011824_010 0.0682927414 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
6 Hb_008705_070 0.0719655492 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
7 Hb_006196_020 0.0725969952 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
8 Hb_000160_230 0.0744302923 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
9 Hb_010712_020 0.0768423512 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
10 Hb_007810_140 0.0785049757 - - Ankyrin repeat-containing protein [Medicago truncatula]
11 Hb_042664_010 0.0794667265 - - hypothetical protein POPTR_0001s07640g, partial [Populus trichocarpa]
12 Hb_003855_070 0.0824112384 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
13 Hb_011856_010 0.0826084763 - - cytochrome P450, putative [Ricinus communis]
14 Hb_139460_010 0.0835987153 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
15 Hb_002758_040 0.0864927896 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_004564_010 0.087704022 - - receptor-kinase, putative [Ricinus communis]
17 Hb_001863_290 0.0883074206 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
18 Hb_000003_470 0.0897765393 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000859_040 0.0923756536 - - Early nodulin 16 precursor, putative [Ricinus communis]
20 Hb_001328_110 0.0935813403 - - PREDICTED: LON peptidase N-terminal domain and RING finger protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_016172_010 Hb_016172_010 Hb_039342_030 Hb_039342_030 Hb_016172_010--Hb_039342_030 Hb_002615_050 Hb_002615_050 Hb_016172_010--Hb_002615_050 Hb_025526_090 Hb_025526_090 Hb_016172_010--Hb_025526_090 Hb_011824_010 Hb_011824_010 Hb_016172_010--Hb_011824_010 Hb_008705_070 Hb_008705_070 Hb_016172_010--Hb_008705_070 Hb_006196_020 Hb_006196_020 Hb_016172_010--Hb_006196_020 Hb_039342_030--Hb_006196_020 Hb_039342_030--Hb_008705_070 Hb_042664_010 Hb_042664_010 Hb_039342_030--Hb_042664_010 Hb_039342_030--Hb_002615_050 Hb_000160_230 Hb_000160_230 Hb_039342_030--Hb_000160_230 Hb_007810_140 Hb_007810_140 Hb_002615_050--Hb_007810_140 Hb_002615_050--Hb_000160_230 Hb_002615_050--Hb_006196_020 Hb_002615_050--Hb_011824_010 Hb_000859_040 Hb_000859_040 Hb_002615_050--Hb_000859_040 Hb_139460_010 Hb_139460_010 Hb_002615_050--Hb_139460_010 Hb_001173_050 Hb_001173_050 Hb_025526_090--Hb_001173_050 Hb_011856_010 Hb_011856_010 Hb_025526_090--Hb_011856_010 Hb_000003_470 Hb_000003_470 Hb_025526_090--Hb_000003_470 Hb_001328_110 Hb_001328_110 Hb_025526_090--Hb_001328_110 Hb_025526_090--Hb_008705_070 Hb_010712_020 Hb_010712_020 Hb_011824_010--Hb_010712_020 Hb_011824_010--Hb_139460_010 Hb_001863_290 Hb_001863_290 Hb_011824_010--Hb_001863_290 Hb_107258_010 Hb_107258_010 Hb_011824_010--Hb_107258_010 Hb_011824_010--Hb_011856_010 Hb_008705_070--Hb_001328_110 Hb_003052_070 Hb_003052_070 Hb_008705_070--Hb_003052_070 Hb_008705_070--Hb_042664_010 Hb_006196_020--Hb_000160_230 Hb_006196_020--Hb_007810_140 Hb_006196_020--Hb_042664_010 Hb_006196_020--Hb_000859_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.17622 8.11741 1.33228 1.64942 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 56.7483 0.0952803

CAGE analysis