Hb_107258_010

Information

Type -
Description -
Location Contig107258: 190-873
Sequence    

Annotation

kegg
ID dosa:Os04t0513900-01
description Os04g0513900; Glycoside hydrolase, family 1 protein.
nr
ID KDP39384.1
description hypothetical protein JCGZ_01141 [Jatropha curcas]
swissprot
ID Q7XSK0
description Beta-glucosidase 18 OS=Oryza sativa subsp. japonica GN=BGLU18 PE=3 SV=2
trembl
ID A0A067L5J5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01141 PE=3 SV=1
Gene Ontology
ID GO:0016023
description beta-glucosidase 18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_107258_010 0.0 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
2 Hb_001863_290 0.0363521792 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
3 Hb_001442_080 0.052510844 transcription factor TF Family: MYB-related transcription factor MYB251 [Fagus crenata]
4 Hb_011824_010 0.0576142189 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
5 Hb_004564_010 0.0580504213 - - receptor-kinase, putative [Ricinus communis]
6 Hb_012660_010 0.0625033812 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
7 Hb_010712_020 0.0727045007 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
8 Hb_003855_070 0.0760293156 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
9 Hb_178389_020 0.083393731 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
10 Hb_002615_050 0.083498397 - - ATP-binding cassette transporter, putative [Ricinus communis]
11 Hb_001288_010 0.0853031804 - - -
12 Hb_000301_030 0.0854865516 - - PREDICTED: pectate lyase-like [Jatropha curcas]
13 Hb_064398_010 0.0870587584 - - cytochrome P450, putative [Ricinus communis]
14 Hb_139460_010 0.089742868 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
15 Hb_011856_010 0.0949945988 - - cytochrome P450, putative [Ricinus communis]
16 Hb_016172_010 0.0957387668 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
17 Hb_007810_140 0.0979202041 - - Ankyrin repeat-containing protein [Medicago truncatula]
18 Hb_000160_230 0.0993398029 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
19 Hb_146023_010 0.1031269287 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_005356_010 0.10451943 - - hypothetical protein POPTR_0003s16550g [Populus trichocarpa]

Gene co-expression network

sample Hb_107258_010 Hb_107258_010 Hb_001863_290 Hb_001863_290 Hb_107258_010--Hb_001863_290 Hb_001442_080 Hb_001442_080 Hb_107258_010--Hb_001442_080 Hb_011824_010 Hb_011824_010 Hb_107258_010--Hb_011824_010 Hb_004564_010 Hb_004564_010 Hb_107258_010--Hb_004564_010 Hb_012660_010 Hb_012660_010 Hb_107258_010--Hb_012660_010 Hb_010712_020 Hb_010712_020 Hb_107258_010--Hb_010712_020 Hb_001863_290--Hb_011824_010 Hb_001863_290--Hb_001442_080 Hb_001863_290--Hb_010712_020 Hb_001863_290--Hb_004564_010 Hb_064398_010 Hb_064398_010 Hb_001863_290--Hb_064398_010 Hb_001442_080--Hb_004564_010 Hb_178389_020 Hb_178389_020 Hb_001442_080--Hb_178389_020 Hb_001442_080--Hb_064398_010 Hb_000483_020 Hb_000483_020 Hb_001442_080--Hb_000483_020 Hb_011824_010--Hb_010712_020 Hb_139460_010 Hb_139460_010 Hb_011824_010--Hb_139460_010 Hb_011856_010 Hb_011856_010 Hb_011824_010--Hb_011856_010 Hb_002615_050 Hb_002615_050 Hb_011824_010--Hb_002615_050 Hb_004564_010--Hb_178389_020 Hb_004564_010--Hb_002615_050 Hb_001288_010 Hb_001288_010 Hb_004564_010--Hb_001288_010 Hb_020332_040 Hb_020332_040 Hb_012660_010--Hb_020332_040 Hb_011486_030 Hb_011486_030 Hb_012660_010--Hb_011486_030 Hb_012660_010--Hb_001288_010 Hb_012660_010--Hb_001863_290 Hb_000301_030 Hb_000301_030 Hb_012660_010--Hb_000301_030 Hb_001141_170 Hb_001141_170 Hb_010712_020--Hb_001141_170 Hb_000160_230 Hb_000160_230 Hb_010712_020--Hb_000160_230 Hb_007810_140 Hb_007810_140 Hb_010712_020--Hb_007810_140 Hb_010712_020--Hb_064398_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.20078 0.110487 0.816612 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 17.0576 0.231199

CAGE analysis