Hb_002615_050

Information

Type -
Description -
Location Contig2615: 69843-71804
Sequence    

Annotation

kegg
ID rcu:RCOM_0068040
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_002530909.1
description ATP-binding cassette transporter, putative [Ricinus communis]
swissprot
ID Q3E9B8
description ABC transporter G family member 23 OS=Arabidopsis thaliana GN=ABCG23 PE=2 SV=1
trembl
ID B9SY40
description ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_0068040 PE=3 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002615_050 0.0 - - ATP-binding cassette transporter, putative [Ricinus communis]
2 Hb_007810_140 0.0405801803 - - Ankyrin repeat-containing protein [Medicago truncatula]
3 Hb_000160_230 0.0415001613 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
4 Hb_006196_020 0.053912388 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
5 Hb_011824_010 0.0598672433 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
6 Hb_000859_040 0.0613941248 - - Early nodulin 16 precursor, putative [Ricinus communis]
7 Hb_139460_010 0.0629055013 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]
8 Hb_004564_010 0.0639415243 - - receptor-kinase, putative [Ricinus communis]
9 Hb_016172_010 0.0642457634 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
10 Hb_042664_010 0.0693876249 - - hypothetical protein POPTR_0001s07640g, partial [Populus trichocarpa]
11 Hb_039342_030 0.0722870592 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011856_010 0.0725172307 - - cytochrome P450, putative [Ricinus communis]
13 Hb_010712_020 0.0786105508 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
14 Hb_001863_290 0.0807782643 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
15 Hb_107258_010 0.083498397 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
16 Hb_008705_070 0.0874532729 - - PREDICTED: uncharacterized protein LOC105638774 [Jatropha curcas]
17 Hb_002534_080 0.0899396502 - - zinc finger protein, putative [Ricinus communis]
18 Hb_025526_090 0.0918738365 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
19 Hb_003855_070 0.092885705 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
20 Hb_027402_120 0.0944829982 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002615_050 Hb_002615_050 Hb_007810_140 Hb_007810_140 Hb_002615_050--Hb_007810_140 Hb_000160_230 Hb_000160_230 Hb_002615_050--Hb_000160_230 Hb_006196_020 Hb_006196_020 Hb_002615_050--Hb_006196_020 Hb_011824_010 Hb_011824_010 Hb_002615_050--Hb_011824_010 Hb_000859_040 Hb_000859_040 Hb_002615_050--Hb_000859_040 Hb_139460_010 Hb_139460_010 Hb_002615_050--Hb_139460_010 Hb_007810_140--Hb_000160_230 Hb_007810_140--Hb_000859_040 Hb_007810_140--Hb_006196_020 Hb_007810_140--Hb_011824_010 Hb_007810_140--Hb_139460_010 Hb_000160_230--Hb_000859_040 Hb_000160_230--Hb_006196_020 Hb_000160_230--Hb_011824_010 Hb_010712_020 Hb_010712_020 Hb_000160_230--Hb_010712_020 Hb_042664_010 Hb_042664_010 Hb_006196_020--Hb_042664_010 Hb_039342_030 Hb_039342_030 Hb_006196_020--Hb_039342_030 Hb_006196_020--Hb_000859_040 Hb_011824_010--Hb_010712_020 Hb_011824_010--Hb_139460_010 Hb_001863_290 Hb_001863_290 Hb_011824_010--Hb_001863_290 Hb_107258_010 Hb_107258_010 Hb_011824_010--Hb_107258_010 Hb_011856_010 Hb_011856_010 Hb_011824_010--Hb_011856_010 Hb_001410_090 Hb_001410_090 Hb_000859_040--Hb_001410_090 Hb_001114_300 Hb_001114_300 Hb_000859_040--Hb_001114_300 Hb_139460_010--Hb_011856_010 Hb_001173_050 Hb_001173_050 Hb_139460_010--Hb_001173_050 Hb_139460_010--Hb_000160_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.29505 0.023396 0.0746777 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.3964 0

CAGE analysis