Hb_001410_090

Information

Type -
Description -
Location Contig1410: 120580-124988
Sequence    

Annotation

kegg
ID rcu:RCOM_1312160
description transferase, putative (EC:2.4.1.12)
nr
ID XP_002518853.1
description transferase, putative [Ricinus communis]
swissprot
ID Q0WVN5
description Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2
trembl
ID B9RYN4
description Transferase, putative OS=Ricinus communis GN=RCOM_1312160 PE=4 SV=1
Gene Ontology
ID GO:0016020
description cellulose synthase-like protein g3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11111: 121095-121583
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001410_090 0.0 - - transferase, putative [Ricinus communis]
2 Hb_000859_040 0.0553579084 - - Early nodulin 16 precursor, putative [Ricinus communis]
3 Hb_005747_040 0.0627425977 - - PREDICTED: peroxidase N1-like, partial [Nicotiana sylvestris]
4 Hb_106528_010 0.0628386112 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
5 Hb_002551_010 0.0642948511 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_001114_290 0.0645891577 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001114_300 0.0674000416 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
8 Hb_000264_250 0.0675585052 - - thioredoxin family protein [Arabidopsis thaliana]
9 Hb_005747_020 0.0680307562 - - bacterial-induced peroxidase [Gossypium schwendimanii]
10 Hb_007810_140 0.0694812829 - - Ankyrin repeat-containing protein [Medicago truncatula]
11 Hb_173102_010 0.0713001854 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
12 Hb_000419_080 0.0715375782 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
13 Hb_000563_070 0.0721591645 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Sesamum indicum]
14 Hb_000160_230 0.0738096336 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
15 Hb_000488_040 0.0766318179 - - unnamed protein product [Vitis vinifera]
16 Hb_002997_010 0.0810904643 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Malus domestica]
17 Hb_001032_060 0.0811178024 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
18 Hb_001114_220 0.0829733332 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
19 Hb_001999_220 0.0831350644 - - PREDICTED: cytochrome P450 86A1 [Jatropha curcas]
20 Hb_122025_010 0.0839287375 - - hypothetical protein POPTR_0003s052201g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_001410_090 Hb_001410_090 Hb_000859_040 Hb_000859_040 Hb_001410_090--Hb_000859_040 Hb_005747_040 Hb_005747_040 Hb_001410_090--Hb_005747_040 Hb_106528_010 Hb_106528_010 Hb_001410_090--Hb_106528_010 Hb_002551_010 Hb_002551_010 Hb_001410_090--Hb_002551_010 Hb_001114_290 Hb_001114_290 Hb_001410_090--Hb_001114_290 Hb_001114_300 Hb_001114_300 Hb_001410_090--Hb_001114_300 Hb_007810_140 Hb_007810_140 Hb_000859_040--Hb_007810_140 Hb_000160_230 Hb_000160_230 Hb_000859_040--Hb_000160_230 Hb_000859_040--Hb_001114_300 Hb_002615_050 Hb_002615_050 Hb_000859_040--Hb_002615_050 Hb_006196_020 Hb_006196_020 Hb_000859_040--Hb_006196_020 Hb_005747_040--Hb_106528_010 Hb_005747_040--Hb_002551_010 Hb_005747_040--Hb_001114_290 Hb_000264_250 Hb_000264_250 Hb_005747_040--Hb_000264_250 Hb_000563_070 Hb_000563_070 Hb_005747_040--Hb_000563_070 Hb_173102_010 Hb_173102_010 Hb_005747_040--Hb_173102_010 Hb_106528_010--Hb_002551_010 Hb_106528_010--Hb_001114_290 Hb_106528_010--Hb_000264_250 Hb_106528_010--Hb_000563_070 Hb_106528_010--Hb_173102_010 Hb_002551_010--Hb_000264_250 Hb_002551_010--Hb_000563_070 Hb_002551_010--Hb_001114_290 Hb_005747_020 Hb_005747_020 Hb_002551_010--Hb_005747_020 Hb_001114_290--Hb_173102_010 Hb_002997_010 Hb_002997_010 Hb_001114_290--Hb_002997_010 Hb_001114_290--Hb_000264_250 Hb_000905_140 Hb_000905_140 Hb_001114_300--Hb_000905_140 Hb_000329_410 Hb_000329_410 Hb_001114_300--Hb_000329_410 Hb_001141_170 Hb_001141_170 Hb_001114_300--Hb_001141_170 Hb_169426_010 Hb_169426_010 Hb_001114_300--Hb_169426_010 Hb_005780_010 Hb_005780_010 Hb_001114_300--Hb_005780_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.837894 0.00646748 0.0317369 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.015588 0 5.97827 0

CAGE analysis