Hb_000905_140

Information

Type -
Description -
Location Contig905: 136006-139265
Sequence    

Annotation

kegg
ID rcu:RCOM_1525380
description retinoblastoma binding protein, putative
nr
ID XP_012065533.1
description PREDICTED: protein gamma response 1 isoform X2 [Jatropha curcas]
swissprot
ID Q9ZRT1
description Protein gamma response 1 OS=Arabidopsis thaliana GN=GR1 PE=1 SV=2
trembl
ID A0A067L873
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16735 PE=4 SV=1
Gene Ontology
ID GO:0006974
description protein gamma response 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000905_140 0.0 - - PREDICTED: protein gamma response 1 isoform X2 [Jatropha curcas]
2 Hb_001114_300 0.0350549246 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
3 Hb_000329_410 0.0353100044 - - Beta-expansin 3 precursor, putative [Ricinus communis]
4 Hb_180483_010 0.0427809136 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_005780_010 0.0429884897 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
6 Hb_169426_010 0.0430949641 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_011495_020 0.0433084538 - - Pectinesterase-2 precursor, putative [Ricinus communis]
8 Hb_002997_010 0.0459225474 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Malus domestica]
9 Hb_000057_030 0.0491887955 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_002200_010 0.0494707232 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
11 Hb_000286_250 0.0504900886 desease resistance Gene Name: NB-ARC -
12 Hb_170761_010 0.0508487369 - - PREDICTED: uncharacterized protein LOC105787794 [Gossypium raimondii]
13 Hb_002081_250 0.0509101325 - - hypothetical protein POPTR_0009s08940g [Populus trichocarpa]
14 Hb_110822_020 0.0512551222 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
15 Hb_008367_020 0.0551397105 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 [Gossypium raimondii]
16 Hb_173102_010 0.0565578593 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
17 Hb_002281_070 0.0592102586 - - hypothetical protein JCGZ_04352 [Jatropha curcas]
18 Hb_021931_030 0.0598788843 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
19 Hb_161981_020 0.0638003706 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_006124_010 0.0691387788 - - -

Gene co-expression network

sample Hb_000905_140 Hb_000905_140 Hb_001114_300 Hb_001114_300 Hb_000905_140--Hb_001114_300 Hb_000329_410 Hb_000329_410 Hb_000905_140--Hb_000329_410 Hb_180483_010 Hb_180483_010 Hb_000905_140--Hb_180483_010 Hb_005780_010 Hb_005780_010 Hb_000905_140--Hb_005780_010 Hb_169426_010 Hb_169426_010 Hb_000905_140--Hb_169426_010 Hb_011495_020 Hb_011495_020 Hb_000905_140--Hb_011495_020 Hb_001114_300--Hb_000329_410 Hb_000859_040 Hb_000859_040 Hb_001114_300--Hb_000859_040 Hb_001141_170 Hb_001141_170 Hb_001114_300--Hb_001141_170 Hb_001114_300--Hb_169426_010 Hb_001114_300--Hb_005780_010 Hb_000329_410--Hb_011495_020 Hb_000057_030 Hb_000057_030 Hb_000329_410--Hb_000057_030 Hb_002200_010 Hb_002200_010 Hb_000329_410--Hb_002200_010 Hb_000329_410--Hb_180483_010 Hb_180483_010--Hb_005780_010 Hb_180483_010--Hb_169426_010 Hb_002997_010 Hb_002997_010 Hb_180483_010--Hb_002997_010 Hb_173102_010 Hb_173102_010 Hb_180483_010--Hb_173102_010 Hb_180483_010--Hb_011495_020 Hb_008367_020 Hb_008367_020 Hb_180483_010--Hb_008367_020 Hb_005780_010--Hb_169426_010 Hb_005780_010--Hb_002997_010 Hb_005780_010--Hb_173102_010 Hb_005780_010--Hb_008367_020 Hb_005780_010--Hb_011495_020 Hb_169426_010--Hb_002997_010 Hb_169426_010--Hb_173102_010 Hb_169426_010--Hb_008367_020 Hb_169426_010--Hb_011495_020 Hb_011495_020--Hb_000057_030 Hb_011495_020--Hb_002200_010 Hb_000286_250 Hb_000286_250 Hb_011495_020--Hb_000286_250 Hb_170761_010 Hb_170761_010 Hb_011495_020--Hb_170761_010 Hb_002081_250 Hb_002081_250 Hb_011495_020--Hb_002081_250 Hb_110822_020 Hb_110822_020 Hb_011495_020--Hb_110822_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.480723 0 0.00833926 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.1091 0

CAGE analysis