Hb_000286_250

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig286: 207266-209706
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000286_250 0.0 desease resistance Gene Name: NB-ARC -
2 Hb_170761_010 0.0005872139 - - PREDICTED: uncharacterized protein LOC105787794 [Gossypium raimondii]
3 Hb_002081_250 0.00068705 - - hypothetical protein POPTR_0009s08940g [Populus trichocarpa]
4 Hb_110822_020 0.0012444541 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
5 Hb_002200_010 0.0017094705 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
6 Hb_000057_030 0.002193861 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_021931_030 0.0138073125 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
8 Hb_011495_020 0.0143192353 - - Pectinesterase-2 precursor, putative [Ricinus communis]
9 Hb_161981_020 0.0189716129 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_006124_010 0.0256847646 - - -
11 Hb_176138_010 0.037930832 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
12 Hb_006810_080 0.0381699157 - - hypothetical protein EUGRSUZ_C015472, partial [Eucalyptus grandis]
13 Hb_022693_100 0.0431200248 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
14 Hb_000866_480 0.0439952126 - - -
15 Hb_180483_010 0.0456718926 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_005780_010 0.0462555076 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
17 Hb_169426_010 0.0465475616 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000329_410 0.0467584599 - - Beta-expansin 3 precursor, putative [Ricinus communis]
19 Hb_000905_140 0.0504900886 - - PREDICTED: protein gamma response 1 isoform X2 [Jatropha curcas]
20 Hb_009230_030 0.052653146 - - -

Gene co-expression network

sample Hb_000286_250 Hb_000286_250 Hb_170761_010 Hb_170761_010 Hb_000286_250--Hb_170761_010 Hb_002081_250 Hb_002081_250 Hb_000286_250--Hb_002081_250 Hb_110822_020 Hb_110822_020 Hb_000286_250--Hb_110822_020 Hb_002200_010 Hb_002200_010 Hb_000286_250--Hb_002200_010 Hb_000057_030 Hb_000057_030 Hb_000286_250--Hb_000057_030 Hb_021931_030 Hb_021931_030 Hb_000286_250--Hb_021931_030 Hb_170761_010--Hb_002081_250 Hb_170761_010--Hb_110822_020 Hb_170761_010--Hb_002200_010 Hb_170761_010--Hb_000057_030 Hb_170761_010--Hb_021931_030 Hb_002081_250--Hb_110822_020 Hb_002081_250--Hb_002200_010 Hb_002081_250--Hb_000057_030 Hb_002081_250--Hb_021931_030 Hb_110822_020--Hb_002200_010 Hb_110822_020--Hb_000057_030 Hb_110822_020--Hb_021931_030 Hb_002200_010--Hb_000057_030 Hb_011495_020 Hb_011495_020 Hb_002200_010--Hb_011495_020 Hb_000057_030--Hb_011495_020 Hb_161981_020 Hb_161981_020 Hb_021931_030--Hb_161981_020 Hb_006124_010 Hb_006124_010 Hb_021931_030--Hb_006124_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0466111 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.170633 0

CAGE analysis