Hb_002081_250

Information

Type -
Description -
Location Contig2081: 403561-404031
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08940g
description POPTRDRAFT_557534; hypothetical protein
nr
ID XP_002313190.1
description hypothetical protein POPTR_0009s08940g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HN16
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s08940g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002081_250 0.0 - - hypothetical protein POPTR_0009s08940g [Populus trichocarpa]
2 Hb_170761_010 9.98361e-05 - - PREDICTED: uncharacterized protein LOC105787794 [Gossypium raimondii]
3 Hb_110822_020 0.0005574044 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
4 Hb_000286_250 0.00068705 desease resistance Gene Name: NB-ARC -
5 Hb_002200_010 0.0023965186 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
6 Hb_000057_030 0.0028809081 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_021931_030 0.0131203453 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
8 Hb_011495_020 0.0150061823 - - Pectinesterase-2 precursor, putative [Ricinus communis]
9 Hb_161981_020 0.0182847202 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_006124_010 0.0249980027 - - -
11 Hb_176138_010 0.0372444036 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
12 Hb_006810_080 0.0374834951 - - hypothetical protein EUGRSUZ_C015472, partial [Eucalyptus grandis]
13 Hb_022693_100 0.0424337734 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
14 Hb_000866_480 0.0433089931 - - -
15 Hb_180483_010 0.046357873 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_005780_010 0.0469414596 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
17 Hb_000329_410 0.0471044749 - - Beta-expansin 3 precursor, putative [Ricinus communis]
18 Hb_169426_010 0.0472334993 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000905_140 0.0509101325 - - PREDICTED: protein gamma response 1 isoform X2 [Jatropha curcas]
20 Hb_009230_030 0.0519672725 - - -

Gene co-expression network

sample Hb_002081_250 Hb_002081_250 Hb_170761_010 Hb_170761_010 Hb_002081_250--Hb_170761_010 Hb_110822_020 Hb_110822_020 Hb_002081_250--Hb_110822_020 Hb_000286_250 Hb_000286_250 Hb_002081_250--Hb_000286_250 Hb_002200_010 Hb_002200_010 Hb_002081_250--Hb_002200_010 Hb_000057_030 Hb_000057_030 Hb_002081_250--Hb_000057_030 Hb_021931_030 Hb_021931_030 Hb_002081_250--Hb_021931_030 Hb_170761_010--Hb_000286_250 Hb_170761_010--Hb_110822_020 Hb_170761_010--Hb_002200_010 Hb_170761_010--Hb_000057_030 Hb_170761_010--Hb_021931_030 Hb_110822_020--Hb_000286_250 Hb_110822_020--Hb_002200_010 Hb_110822_020--Hb_000057_030 Hb_110822_020--Hb_021931_030 Hb_000286_250--Hb_002200_010 Hb_000286_250--Hb_000057_030 Hb_000286_250--Hb_021931_030 Hb_002200_010--Hb_000057_030 Hb_011495_020 Hb_011495_020 Hb_002200_010--Hb_011495_020 Hb_000057_030--Hb_011495_020 Hb_161981_020 Hb_161981_020 Hb_021931_030--Hb_161981_020 Hb_006124_010 Hb_006124_010 Hb_021931_030--Hb_006124_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.120282 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.438595 0

CAGE analysis