Hb_021931_030

Information

Type -
Description -
Location Contig21931: 24942-26875
Sequence    

Annotation

kegg
ID cic:CICLE_v10018544mg
description hypothetical protein
nr
ID KDP38817.1
description hypothetical protein JCGZ_04974 [Jatropha curcas]
swissprot
ID O23530
description Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3
trembl
ID A0A067KRS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04974 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021931_030 0.0 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
2 Hb_161981_020 0.0051651751 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_006124_010 0.0118801472 - - -
4 Hb_110822_020 0.012563002 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
5 Hb_002081_250 0.0131203453 - - hypothetical protein POPTR_0009s08940g [Populus trichocarpa]
6 Hb_170761_010 0.0132201699 - - PREDICTED: uncharacterized protein LOC105787794 [Gossypium raimondii]
7 Hb_000286_250 0.0138073125 desease resistance Gene Name: NB-ARC -
8 Hb_002200_010 0.0155165382 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
9 Hb_000057_030 0.0160008493 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_176138_010 0.02413145 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
11 Hb_006810_080 0.0243706599 - - hypothetical protein EUGRSUZ_C015472, partial [Eucalyptus grandis]
12 Hb_011495_020 0.0281227544 - - Pectinesterase-2 precursor, putative [Ricinus communis]
13 Hb_022693_100 0.0293235796 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
14 Hb_000866_480 0.0301993036 - - -
15 Hb_009230_030 0.0388631639 - - -
16 Hb_000526_130 0.0461711531 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
17 Hb_003724_030 0.0481043231 - - -
18 Hb_001504_290 0.0495712094 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
19 Hb_000329_410 0.0549503482 - - Beta-expansin 3 precursor, putative [Ricinus communis]
20 Hb_000107_460 0.0564157017 - - PREDICTED: uncharacterized protein LOC104585930 [Nelumbo nucifera]

Gene co-expression network

sample Hb_021931_030 Hb_021931_030 Hb_161981_020 Hb_161981_020 Hb_021931_030--Hb_161981_020 Hb_006124_010 Hb_006124_010 Hb_021931_030--Hb_006124_010 Hb_110822_020 Hb_110822_020 Hb_021931_030--Hb_110822_020 Hb_002081_250 Hb_002081_250 Hb_021931_030--Hb_002081_250 Hb_170761_010 Hb_170761_010 Hb_021931_030--Hb_170761_010 Hb_000286_250 Hb_000286_250 Hb_021931_030--Hb_000286_250 Hb_161981_020--Hb_006124_010 Hb_161981_020--Hb_110822_020 Hb_161981_020--Hb_002081_250 Hb_161981_020--Hb_170761_010 Hb_176138_010 Hb_176138_010 Hb_161981_020--Hb_176138_010 Hb_006124_010--Hb_176138_010 Hb_006810_080 Hb_006810_080 Hb_006124_010--Hb_006810_080 Hb_022693_100 Hb_022693_100 Hb_006124_010--Hb_022693_100 Hb_000866_480 Hb_000866_480 Hb_006124_010--Hb_000866_480 Hb_110822_020--Hb_002081_250 Hb_110822_020--Hb_170761_010 Hb_110822_020--Hb_000286_250 Hb_002200_010 Hb_002200_010 Hb_110822_020--Hb_002200_010 Hb_000057_030 Hb_000057_030 Hb_110822_020--Hb_000057_030 Hb_002081_250--Hb_170761_010 Hb_002081_250--Hb_000286_250 Hb_002081_250--Hb_002200_010 Hb_002081_250--Hb_000057_030 Hb_170761_010--Hb_000286_250 Hb_170761_010--Hb_002200_010 Hb_170761_010--Hb_000057_030 Hb_000286_250--Hb_002200_010 Hb_000286_250--Hb_000057_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0505523 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.171117 0

CAGE analysis