Hb_161981_020

Information

Type -
Description -
Location Contig161981: 12500-12718
Sequence    

Annotation

kegg
ID rcu:RCOM_1452220
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002513041.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RG89
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1452220 PE=4 SV=1
Gene Ontology
ID GO:0003824
description receptor-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161981_020 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_021931_030 0.0051651751 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
3 Hb_006124_010 0.0067152279 - - -
4 Hb_110822_020 0.0177274349 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
5 Hb_002081_250 0.0182847202 - - hypothetical protein POPTR_0009s08940g [Populus trichocarpa]
6 Hb_170761_010 0.0183845342 - - PREDICTED: uncharacterized protein LOC105787794 [Gossypium raimondii]
7 Hb_176138_010 0.0189677159 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
8 Hb_000286_250 0.0189716129 desease resistance Gene Name: NB-ARC -
9 Hb_006810_080 0.0192069579 - - hypothetical protein EUGRSUZ_C015472, partial [Eucalyptus grandis]
10 Hb_002200_010 0.0206806389 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
11 Hb_000057_030 0.0211648896 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_022693_100 0.0241606175 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
13 Hb_000866_480 0.0250364872 - - -
14 Hb_011495_020 0.0332847316 - - Pectinesterase-2 precursor, putative [Ricinus communis]
15 Hb_009230_030 0.0337020218 - - -
16 Hb_000526_130 0.0410117454 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
17 Hb_003724_030 0.0429454223 - - -
18 Hb_001504_290 0.0444127064 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
19 Hb_000107_460 0.0512592027 - - PREDICTED: uncharacterized protein LOC104585930 [Nelumbo nucifera]
20 Hb_000329_410 0.0585554339 - - Beta-expansin 3 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_161981_020 Hb_161981_020 Hb_021931_030 Hb_021931_030 Hb_161981_020--Hb_021931_030 Hb_006124_010 Hb_006124_010 Hb_161981_020--Hb_006124_010 Hb_110822_020 Hb_110822_020 Hb_161981_020--Hb_110822_020 Hb_002081_250 Hb_002081_250 Hb_161981_020--Hb_002081_250 Hb_170761_010 Hb_170761_010 Hb_161981_020--Hb_170761_010 Hb_176138_010 Hb_176138_010 Hb_161981_020--Hb_176138_010 Hb_021931_030--Hb_006124_010 Hb_021931_030--Hb_110822_020 Hb_021931_030--Hb_002081_250 Hb_021931_030--Hb_170761_010 Hb_000286_250 Hb_000286_250 Hb_021931_030--Hb_000286_250 Hb_006124_010--Hb_176138_010 Hb_006810_080 Hb_006810_080 Hb_006124_010--Hb_006810_080 Hb_022693_100 Hb_022693_100 Hb_006124_010--Hb_022693_100 Hb_000866_480 Hb_000866_480 Hb_006124_010--Hb_000866_480 Hb_110822_020--Hb_002081_250 Hb_110822_020--Hb_170761_010 Hb_110822_020--Hb_000286_250 Hb_002200_010 Hb_002200_010 Hb_110822_020--Hb_002200_010 Hb_000057_030 Hb_000057_030 Hb_110822_020--Hb_000057_030 Hb_002081_250--Hb_170761_010 Hb_002081_250--Hb_000286_250 Hb_002081_250--Hb_002200_010 Hb_002081_250--Hb_000057_030 Hb_170761_010--Hb_000286_250 Hb_170761_010--Hb_002200_010 Hb_170761_010--Hb_000057_030 Hb_176138_010--Hb_006810_080 Hb_176138_010--Hb_022693_100 Hb_176138_010--Hb_000866_480 Hb_009230_030 Hb_009230_030 Hb_176138_010--Hb_009230_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.25539 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.12848 0

CAGE analysis