Hb_110822_020

Information

Type transcription factor
Description TF Family: NAC
Location Contig110822: 3555-4545
Sequence    

Annotation

kegg
ID rcu:RCOM_1259530
description NAC domain-containing protein, putative
nr
ID XP_012074436.1
description PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
swissprot
ID Q9FMR3
description NAC domain-containing protein 90 OS=Arabidopsis thaliana GN=NAC090 PE=2 SV=1
trembl
ID R4N5M1
description NAC transcription factor 041 OS=Jatropha curcas PE=4 SV=1
Gene Ontology
ID GO:0003677
description nac domain-containing protein 90-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_110822_020 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
2 Hb_002081_250 0.0005574044 - - hypothetical protein POPTR_0009s08940g [Populus trichocarpa]
3 Hb_170761_010 0.0006572405 - - PREDICTED: uncharacterized protein LOC105787794 [Gossypium raimondii]
4 Hb_000286_250 0.0012444541 desease resistance Gene Name: NB-ARC -
5 Hb_002200_010 0.0029539203 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
6 Hb_000057_030 0.0034383087 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_021931_030 0.012563002 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
8 Hb_011495_020 0.0155634961 - - Pectinesterase-2 precursor, putative [Ricinus communis]
9 Hb_161981_020 0.0177274349 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_006124_010 0.0244408203 - - -
11 Hb_176138_010 0.0366874861 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
12 Hb_006810_080 0.0369265837 - - hypothetical protein EUGRSUZ_C015472, partial [Eucalyptus grandis]
13 Hb_022693_100 0.041876997 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
14 Hb_000866_480 0.0427522422 - - -
15 Hb_180483_010 0.0469143879 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000329_410 0.0473906357 - - Beta-expansin 3 precursor, putative [Ricinus communis]
17 Hb_005780_010 0.0474979512 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
18 Hb_169426_010 0.0477899791 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000905_140 0.0512551222 - - PREDICTED: protein gamma response 1 isoform X2 [Jatropha curcas]
20 Hb_009230_030 0.0514107984 - - -

Gene co-expression network

sample Hb_110822_020 Hb_110822_020 Hb_002081_250 Hb_002081_250 Hb_110822_020--Hb_002081_250 Hb_170761_010 Hb_170761_010 Hb_110822_020--Hb_170761_010 Hb_000286_250 Hb_000286_250 Hb_110822_020--Hb_000286_250 Hb_002200_010 Hb_002200_010 Hb_110822_020--Hb_002200_010 Hb_000057_030 Hb_000057_030 Hb_110822_020--Hb_000057_030 Hb_021931_030 Hb_021931_030 Hb_110822_020--Hb_021931_030 Hb_002081_250--Hb_170761_010 Hb_002081_250--Hb_000286_250 Hb_002081_250--Hb_002200_010 Hb_002081_250--Hb_000057_030 Hb_002081_250--Hb_021931_030 Hb_170761_010--Hb_000286_250 Hb_170761_010--Hb_002200_010 Hb_170761_010--Hb_000057_030 Hb_170761_010--Hb_021931_030 Hb_000286_250--Hb_002200_010 Hb_000286_250--Hb_000057_030 Hb_000286_250--Hb_021931_030 Hb_002200_010--Hb_000057_030 Hb_011495_020 Hb_011495_020 Hb_002200_010--Hb_011495_020 Hb_000057_030--Hb_011495_020 Hb_161981_020 Hb_161981_020 Hb_021931_030--Hb_161981_020 Hb_006124_010 Hb_006124_010 Hb_021931_030--Hb_006124_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0339964 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.123569 0

CAGE analysis