Hb_011495_020

Information

Type -
Description -
Location Contig11495: 48178-49962
Sequence    

Annotation

kegg
ID rcu:RCOM_1179060
description Pectinesterase-2 precursor, putative (EC:3.1.1.11)
nr
ID XP_002523112.1
description Pectinesterase-2 precursor, putative [Ricinus communis]
swissprot
ID Q9SRX4
description Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1
trembl
ID B9SAU3
description Pectinesterase OS=Ricinus communis GN=RCOM_1179060 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable pectinesterase pectinesterase inhibitor 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011495_020 0.0 - - Pectinesterase-2 precursor, putative [Ricinus communis]
2 Hb_000057_030 0.0121256411 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_002200_010 0.0126099808 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
4 Hb_000286_250 0.0143192353 desease resistance Gene Name: NB-ARC -
5 Hb_170761_010 0.0149063618 - - PREDICTED: uncharacterized protein LOC105787794 [Gossypium raimondii]
6 Hb_002081_250 0.0150061823 - - hypothetical protein POPTR_0009s08940g [Populus trichocarpa]
7 Hb_110822_020 0.0155634961 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
8 Hb_021931_030 0.0281227544 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
9 Hb_180483_010 0.0313681424 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_005780_010 0.0319522636 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
11 Hb_169426_010 0.0322445742 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_161981_020 0.0332847316 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_002997_010 0.0388278156 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Malus domestica]
14 Hb_006124_010 0.0399941585 - - -
15 Hb_000329_410 0.0415179589 - - Beta-expansin 3 precursor, putative [Ricinus communis]
16 Hb_000905_140 0.0433084538 - - PREDICTED: protein gamma response 1 isoform X2 [Jatropha curcas]
17 Hb_008367_020 0.0491464777 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 [Gossypium raimondii]
18 Hb_176138_010 0.05223146 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
19 Hb_006810_080 0.0524703481 - - hypothetical protein EUGRSUZ_C015472, partial [Eucalyptus grandis]
20 Hb_173102_010 0.0563136408 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_011495_020 Hb_011495_020 Hb_000057_030 Hb_000057_030 Hb_011495_020--Hb_000057_030 Hb_002200_010 Hb_002200_010 Hb_011495_020--Hb_002200_010 Hb_000286_250 Hb_000286_250 Hb_011495_020--Hb_000286_250 Hb_170761_010 Hb_170761_010 Hb_011495_020--Hb_170761_010 Hb_002081_250 Hb_002081_250 Hb_011495_020--Hb_002081_250 Hb_110822_020 Hb_110822_020 Hb_011495_020--Hb_110822_020 Hb_000057_030--Hb_002200_010 Hb_000057_030--Hb_000286_250 Hb_000057_030--Hb_170761_010 Hb_000057_030--Hb_002081_250 Hb_000057_030--Hb_110822_020 Hb_002200_010--Hb_000286_250 Hb_002200_010--Hb_170761_010 Hb_002200_010--Hb_002081_250 Hb_002200_010--Hb_110822_020 Hb_000286_250--Hb_170761_010 Hb_000286_250--Hb_002081_250 Hb_000286_250--Hb_110822_020 Hb_021931_030 Hb_021931_030 Hb_000286_250--Hb_021931_030 Hb_170761_010--Hb_002081_250 Hb_170761_010--Hb_110822_020 Hb_170761_010--Hb_021931_030 Hb_002081_250--Hb_110822_020 Hb_002081_250--Hb_021931_030 Hb_110822_020--Hb_021931_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.103189 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.4105 0

CAGE analysis