Hb_005780_010

Information

Type -
Description -
Location Contig5780: 5706-6192
Sequence    

Annotation

kegg
ID rcu:RCOM_0766900
description (R)-limonene synthase, putative (EC:4.2.3.20)
nr
ID XP_012075360.1
description PREDICTED: terpene synthase 10-like [Jatropha curcas]
swissprot
ID Q93X23
description Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1
trembl
ID A0A067KK14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09482 PE=4 SV=1
Gene Ontology
ID GO:0009507
description terpene synthase 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005780_010 0.0 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
2 Hb_169426_010 0.0002925583 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_180483_010 0.000584602 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_002997_010 0.0068826561 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Malus domestica]
5 Hb_173102_010 0.0243991168 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
6 Hb_008367_020 0.0317044489 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 [Gossypium raimondii]
7 Hb_011495_020 0.0319522636 - - Pectinesterase-2 precursor, putative [Ricinus communis]
8 Hb_001114_290 0.0427797554 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000905_140 0.0429884897 - - PREDICTED: protein gamma response 1 isoform X2 [Jatropha curcas]
10 Hb_000057_030 0.0440649543 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_002200_010 0.0445486406 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
12 Hb_000286_250 0.0462555076 desease resistance Gene Name: NB-ARC -
13 Hb_000329_410 0.0465564736 - - Beta-expansin 3 precursor, putative [Ricinus communis]
14 Hb_170761_010 0.0468417849 - - PREDICTED: uncharacterized protein LOC105787794 [Gossypium raimondii]
15 Hb_002081_250 0.0469414596 - - hypothetical protein POPTR_0009s08940g [Populus trichocarpa]
16 Hb_110822_020 0.0474979512 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
17 Hb_001114_300 0.0593908505 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
18 Hb_021931_030 0.0600352309 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
19 Hb_005747_040 0.0616730762 - - PREDICTED: peroxidase N1-like, partial [Nicotiana sylvestris]
20 Hb_106528_010 0.0631791035 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_005780_010 Hb_005780_010 Hb_169426_010 Hb_169426_010 Hb_005780_010--Hb_169426_010 Hb_180483_010 Hb_180483_010 Hb_005780_010--Hb_180483_010 Hb_002997_010 Hb_002997_010 Hb_005780_010--Hb_002997_010 Hb_173102_010 Hb_173102_010 Hb_005780_010--Hb_173102_010 Hb_008367_020 Hb_008367_020 Hb_005780_010--Hb_008367_020 Hb_011495_020 Hb_011495_020 Hb_005780_010--Hb_011495_020 Hb_169426_010--Hb_180483_010 Hb_169426_010--Hb_002997_010 Hb_169426_010--Hb_173102_010 Hb_169426_010--Hb_008367_020 Hb_169426_010--Hb_011495_020 Hb_180483_010--Hb_002997_010 Hb_180483_010--Hb_173102_010 Hb_180483_010--Hb_011495_020 Hb_180483_010--Hb_008367_020 Hb_002997_010--Hb_173102_010 Hb_002997_010--Hb_008367_020 Hb_001114_290 Hb_001114_290 Hb_002997_010--Hb_001114_290 Hb_173102_010--Hb_001114_290 Hb_173102_010--Hb_008367_020 Hb_008367_020--Hb_001114_290 Hb_000057_030 Hb_000057_030 Hb_011495_020--Hb_000057_030 Hb_002200_010 Hb_002200_010 Hb_011495_020--Hb_002200_010 Hb_000286_250 Hb_000286_250 Hb_011495_020--Hb_000286_250 Hb_170761_010 Hb_170761_010 Hb_011495_020--Hb_170761_010 Hb_002081_250 Hb_002081_250 Hb_011495_020--Hb_002081_250 Hb_110822_020 Hb_110822_020 Hb_011495_020--Hb_110822_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.8641 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 37.9642 0

CAGE analysis