Hb_002997_010

Information

Type -
Description -
Location Contig2997: 6870-9463
Sequence    

Annotation

kegg
ID mdm:103409199
description probable leucine-rich repeat receptor-like protein kinase At1g35710
nr
ID XP_008346236.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Malus domestica]
swissprot
ID C0LGE4
description Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=2 SV=1
trembl
ID A0A0B2PTD6
description Leucine-rich repeat receptor-like protein kinase PXL2 OS=Glycine soja GN=glysoja_019213 PE=4 SV=1
Gene Ontology
ID GO:0005515
description receptor-like protein 12 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002997_010 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Malus domestica]
2 Hb_169426_010 0.0065901096 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_005780_010 0.0068826561 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
4 Hb_180483_010 0.0074672316 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_173102_010 0.0175191879 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
6 Hb_008367_020 0.0311179716 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 [Gossypium raimondii]
7 Hb_001114_290 0.0359072632 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011495_020 0.0388278156 - - Pectinesterase-2 precursor, putative [Ricinus communis]
9 Hb_000905_140 0.0459225474 - - PREDICTED: protein gamma response 1 isoform X2 [Jatropha curcas]
10 Hb_000329_410 0.0502965033 - - Beta-expansin 3 precursor, putative [Ricinus communis]
11 Hb_000057_030 0.0509350449 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_002200_010 0.0514184842 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
13 Hb_000286_250 0.0531244622 desease resistance Gene Name: NB-ARC -
14 Hb_170761_010 0.053710428 - - PREDICTED: uncharacterized protein LOC105787794 [Gossypium raimondii]
15 Hb_002081_250 0.0538100494 - - hypothetical protein POPTR_0009s08940g [Populus trichocarpa]
16 Hb_110822_020 0.0543662419 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
17 Hb_005747_040 0.0548136538 - - PREDICTED: peroxidase N1-like, partial [Nicotiana sylvestris]
18 Hb_106528_010 0.0563209777 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
19 Hb_001114_300 0.0597304131 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
20 Hb_002551_010 0.0659614113 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_002997_010 Hb_002997_010 Hb_169426_010 Hb_169426_010 Hb_002997_010--Hb_169426_010 Hb_005780_010 Hb_005780_010 Hb_002997_010--Hb_005780_010 Hb_180483_010 Hb_180483_010 Hb_002997_010--Hb_180483_010 Hb_173102_010 Hb_173102_010 Hb_002997_010--Hb_173102_010 Hb_008367_020 Hb_008367_020 Hb_002997_010--Hb_008367_020 Hb_001114_290 Hb_001114_290 Hb_002997_010--Hb_001114_290 Hb_169426_010--Hb_005780_010 Hb_169426_010--Hb_180483_010 Hb_169426_010--Hb_173102_010 Hb_169426_010--Hb_008367_020 Hb_011495_020 Hb_011495_020 Hb_169426_010--Hb_011495_020 Hb_005780_010--Hb_180483_010 Hb_005780_010--Hb_173102_010 Hb_005780_010--Hb_008367_020 Hb_005780_010--Hb_011495_020 Hb_180483_010--Hb_173102_010 Hb_180483_010--Hb_011495_020 Hb_180483_010--Hb_008367_020 Hb_173102_010--Hb_001114_290 Hb_173102_010--Hb_008367_020 Hb_008367_020--Hb_001114_290 Hb_005747_040 Hb_005747_040 Hb_001114_290--Hb_005747_040 Hb_106528_010 Hb_106528_010 Hb_001114_290--Hb_106528_010 Hb_002551_010 Hb_002551_010 Hb_001114_290--Hb_002551_010 Hb_000264_250 Hb_000264_250 Hb_001114_290--Hb_000264_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0172287 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0868522 0

CAGE analysis