Hb_000264_250

Information

Type -
Description -
Location Contig264: 206403-208177
Sequence    

Annotation

kegg
ID ath:AT4G32580
description thioredoxin family protein
nr
ID NP_194984.1
description thioredoxin family protein [Arabidopsis thaliana]
swissprot
ID A2YIW7
description Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1
trembl
ID O65541
description Putative uncharacterized protein AT4g32580 OS=Arabidopsis thaliana GN=F4D11.220 PE=2 SV=1
Gene Ontology
ID GO:0045454
description monothiol glutaredoxin-s17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000264_250 0.0 - - thioredoxin family protein [Arabidopsis thaliana]
2 Hb_000563_070 0.0105629247 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Sesamum indicum]
3 Hb_002551_010 0.0108736466 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_106528_010 0.0205531532 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
5 Hb_005747_040 0.0220648759 - - PREDICTED: peroxidase N1-like, partial [Nicotiana sylvestris]
6 Hb_005747_020 0.0281879779 - - bacterial-induced peroxidase [Gossypium schwendimanii]
7 Hb_094462_010 0.0378113699 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
8 Hb_001114_290 0.0409897718 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000419_080 0.0506124296 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
10 Hb_001114_220 0.0513288884 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
11 Hb_122025_010 0.0589257387 - - hypothetical protein POPTR_0003s052201g, partial [Populus trichocarpa]
12 Hb_173102_010 0.059336225 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
13 Hb_001032_060 0.0636050527 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
14 Hb_001410_090 0.0675585052 - - transferase, putative [Ricinus communis]
15 Hb_000022_270 0.0710024398 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003685_060 0.073526761 - - PREDICTED: laccase-15 [Jatropha curcas]
17 Hb_001604_140 0.076327681 - - PREDICTED: ABC transporter G family member 10-like [Populus euphratica]
18 Hb_002997_010 0.0767675974 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Malus domestica]
19 Hb_000488_040 0.0792602663 - - unnamed protein product [Vitis vinifera]
20 Hb_000201_080 0.0809616924 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000264_250 Hb_000264_250 Hb_000563_070 Hb_000563_070 Hb_000264_250--Hb_000563_070 Hb_002551_010 Hb_002551_010 Hb_000264_250--Hb_002551_010 Hb_106528_010 Hb_106528_010 Hb_000264_250--Hb_106528_010 Hb_005747_040 Hb_005747_040 Hb_000264_250--Hb_005747_040 Hb_005747_020 Hb_005747_020 Hb_000264_250--Hb_005747_020 Hb_094462_010 Hb_094462_010 Hb_000264_250--Hb_094462_010 Hb_000563_070--Hb_002551_010 Hb_000563_070--Hb_005747_020 Hb_000563_070--Hb_094462_010 Hb_000563_070--Hb_106528_010 Hb_000563_070--Hb_005747_040 Hb_002551_010--Hb_106528_010 Hb_002551_010--Hb_005747_040 Hb_001114_290 Hb_001114_290 Hb_002551_010--Hb_001114_290 Hb_002551_010--Hb_005747_020 Hb_106528_010--Hb_005747_040 Hb_106528_010--Hb_001114_290 Hb_173102_010 Hb_173102_010 Hb_106528_010--Hb_173102_010 Hb_005747_040--Hb_001114_290 Hb_005747_040--Hb_173102_010 Hb_005747_020--Hb_106528_010 Hb_005747_020--Hb_094462_010 Hb_005747_020--Hb_005747_040 Hb_000022_270 Hb_000022_270 Hb_094462_010--Hb_000022_270 Hb_003685_060 Hb_003685_060 Hb_094462_010--Hb_003685_060 Hb_000419_080 Hb_000419_080 Hb_094462_010--Hb_000419_080 Hb_001604_140 Hb_001604_140 Hb_094462_010--Hb_001604_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.139827 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.20421 0

CAGE analysis