Hb_000022_270

Information

Type -
Description -
Location Contig22: 401519-401857
Sequence    

Annotation

kegg
ID rcu:RCOM_0803390
description hypothetical protein
nr
ID XP_002516585.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RS66
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0803390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 049_H14.ab1: 401437-401892

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000022_270 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003685_060 0.0025542283 - - PREDICTED: laccase-15 [Jatropha curcas]
3 Hb_001604_140 0.0053913233 - - PREDICTED: ABC transporter G family member 10-like [Populus euphratica]
4 Hb_000201_080 0.0100923042 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_126040_020 0.0150952943 - - -
6 Hb_094462_010 0.0333720512 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
7 Hb_001675_210 0.0480700831 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
8 Hb_004981_020 0.050255694 - - PREDICTED: uncharacterized protein LOC103706119 [Phoenix dactylifera]
9 Hb_143766_040 0.0531462574 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
10 Hb_000419_080 0.0541285189 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
11 Hb_007337_010 0.0545809657 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
12 Hb_001032_060 0.0549867263 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
13 Hb_000563_070 0.0605243958 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Sesamum indicum]
14 Hb_187247_010 0.0659001107 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
15 Hb_005747_020 0.0680658941 - - bacterial-induced peroxidase [Gossypium schwendimanii]
16 Hb_000264_250 0.0710024398 - - thioredoxin family protein [Arabidopsis thaliana]
17 Hb_028013_010 0.0717733719 - - alcohol dehydrogenase, putative [Ricinus communis]
18 Hb_018709_010 0.0723698384 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
19 Hb_004592_020 0.0756603131 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
20 Hb_061590_010 0.078453956 - - hypothetical protein JCGZ_23475 [Jatropha curcas]

Gene co-expression network

sample Hb_000022_270 Hb_000022_270 Hb_003685_060 Hb_003685_060 Hb_000022_270--Hb_003685_060 Hb_001604_140 Hb_001604_140 Hb_000022_270--Hb_001604_140 Hb_000201_080 Hb_000201_080 Hb_000022_270--Hb_000201_080 Hb_126040_020 Hb_126040_020 Hb_000022_270--Hb_126040_020 Hb_094462_010 Hb_094462_010 Hb_000022_270--Hb_094462_010 Hb_001675_210 Hb_001675_210 Hb_000022_270--Hb_001675_210 Hb_003685_060--Hb_001604_140 Hb_003685_060--Hb_000201_080 Hb_003685_060--Hb_126040_020 Hb_003685_060--Hb_094462_010 Hb_004981_020 Hb_004981_020 Hb_003685_060--Hb_004981_020 Hb_001604_140--Hb_000201_080 Hb_001604_140--Hb_126040_020 Hb_001604_140--Hb_094462_010 Hb_001604_140--Hb_004981_020 Hb_000201_080--Hb_126040_020 Hb_000201_080--Hb_004981_020 Hb_143766_040 Hb_143766_040 Hb_000201_080--Hb_143766_040 Hb_126040_020--Hb_004981_020 Hb_126040_020--Hb_143766_040 Hb_000563_070 Hb_000563_070 Hb_094462_010--Hb_000563_070 Hb_000264_250 Hb_000264_250 Hb_094462_010--Hb_000264_250 Hb_000419_080 Hb_000419_080 Hb_094462_010--Hb_000419_080 Hb_001675_210--Hb_001604_140 Hb_001675_210--Hb_003685_060 Hb_001675_210--Hb_000201_080 Hb_001675_210--Hb_126040_020 Hb_001675_210--Hb_094462_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.516976 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.30307 0

CAGE analysis