Hb_126040_020

Information

Type -
Description -
Location Contig126040: 6881-7346
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_126040_020 0.0 - - -
2 Hb_000201_080 0.0050053096 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
3 Hb_001604_140 0.0097063353 - - PREDICTED: ABC transporter G family member 10-like [Populus euphratica]
4 Hb_003685_060 0.0125424995 - - PREDICTED: laccase-15 [Jatropha curcas]
5 Hb_000022_270 0.0150952943 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004981_020 0.0352540973 - - PREDICTED: uncharacterized protein LOC103706119 [Phoenix dactylifera]
7 Hb_143766_040 0.0381593368 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
8 Hb_007337_010 0.0396017771 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
9 Hb_094462_010 0.0484032733 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
10 Hb_001675_210 0.0491109465 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
11 Hb_187247_010 0.0509928985 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
12 Hb_061590_010 0.0636513838 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
13 Hb_001032_060 0.0640472671 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
14 Hb_005726_030 0.0649113684 - - hypothetical protein CISIN_1g020511mg [Citrus sinensis]
15 Hb_000419_080 0.0655756693 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
16 Hb_028013_010 0.0717044277 - - alcohol dehydrogenase, putative [Ricinus communis]
17 Hb_020141_020 0.0731600673 - - -
18 Hb_018709_010 0.0731954505 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
19 Hb_000563_070 0.0754538011 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Sesamum indicum]
20 Hb_106528_020 0.0784333729 - - Cationic peroxidase 2 precursor [Theobroma cacao]

Gene co-expression network

sample Hb_126040_020 Hb_126040_020 Hb_000201_080 Hb_000201_080 Hb_126040_020--Hb_000201_080 Hb_001604_140 Hb_001604_140 Hb_126040_020--Hb_001604_140 Hb_003685_060 Hb_003685_060 Hb_126040_020--Hb_003685_060 Hb_000022_270 Hb_000022_270 Hb_126040_020--Hb_000022_270 Hb_004981_020 Hb_004981_020 Hb_126040_020--Hb_004981_020 Hb_143766_040 Hb_143766_040 Hb_126040_020--Hb_143766_040 Hb_000201_080--Hb_001604_140 Hb_000201_080--Hb_003685_060 Hb_000201_080--Hb_000022_270 Hb_000201_080--Hb_004981_020 Hb_000201_080--Hb_143766_040 Hb_001604_140--Hb_003685_060 Hb_001604_140--Hb_000022_270 Hb_094462_010 Hb_094462_010 Hb_001604_140--Hb_094462_010 Hb_001604_140--Hb_004981_020 Hb_003685_060--Hb_000022_270 Hb_003685_060--Hb_094462_010 Hb_003685_060--Hb_004981_020 Hb_000022_270--Hb_094462_010 Hb_001675_210 Hb_001675_210 Hb_000022_270--Hb_001675_210 Hb_004981_020--Hb_143766_040 Hb_007337_010 Hb_007337_010 Hb_004981_020--Hb_007337_010 Hb_187247_010 Hb_187247_010 Hb_004981_020--Hb_187247_010 Hb_061590_010 Hb_061590_010 Hb_004981_020--Hb_061590_010 Hb_005726_030 Hb_005726_030 Hb_004981_020--Hb_005726_030 Hb_143766_040--Hb_007337_010 Hb_143766_040--Hb_187247_010 Hb_143766_040--Hb_061590_010 Hb_143766_040--Hb_005726_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.47392 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 8.90272 0

CAGE analysis