Hb_000201_080

Information

Type transcription factor
Description TF Family: WRKY
Location Contig201: 124674-129129
Sequence    

Annotation

kegg
ID rcu:RCOM_0697770
description WRKY transcription factor, putative
nr
ID XP_002520124.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID Q9LXG8
description Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1
trembl
ID B9S2A5
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_0697770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000201_080 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_001604_140 0.0047017337 - - PREDICTED: ABC transporter G family member 10-like [Populus euphratica]
3 Hb_126040_020 0.0050053096 - - -
4 Hb_003685_060 0.0075386423 - - PREDICTED: laccase-15 [Jatropha curcas]
5 Hb_000022_270 0.0100923042 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004981_020 0.0402335676 - - PREDICTED: uncharacterized protein LOC103706119 [Phoenix dactylifera]
7 Hb_143766_040 0.0431343409 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
8 Hb_094462_010 0.0434265257 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
9 Hb_007337_010 0.0445744133 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
10 Hb_001675_210 0.0482489488 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
11 Hb_187247_010 0.05594314 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
12 Hb_001032_060 0.0607854063 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
13 Hb_000419_080 0.0616171065 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
14 Hb_061590_010 0.0685683621 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
15 Hb_005726_030 0.0698245117 - - hypothetical protein CISIN_1g020511mg [Citrus sinensis]
16 Hb_000563_070 0.0705146055 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Sesamum indicum]
17 Hb_028013_010 0.071376087 - - alcohol dehydrogenase, putative [Ricinus communis]
18 Hb_018709_010 0.0725774764 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
19 Hb_020141_020 0.0752502454 - - -
20 Hb_005747_020 0.0773370472 - - bacterial-induced peroxidase [Gossypium schwendimanii]

Gene co-expression network

sample Hb_000201_080 Hb_000201_080 Hb_001604_140 Hb_001604_140 Hb_000201_080--Hb_001604_140 Hb_126040_020 Hb_126040_020 Hb_000201_080--Hb_126040_020 Hb_003685_060 Hb_003685_060 Hb_000201_080--Hb_003685_060 Hb_000022_270 Hb_000022_270 Hb_000201_080--Hb_000022_270 Hb_004981_020 Hb_004981_020 Hb_000201_080--Hb_004981_020 Hb_143766_040 Hb_143766_040 Hb_000201_080--Hb_143766_040 Hb_001604_140--Hb_003685_060 Hb_001604_140--Hb_000022_270 Hb_001604_140--Hb_126040_020 Hb_094462_010 Hb_094462_010 Hb_001604_140--Hb_094462_010 Hb_001604_140--Hb_004981_020 Hb_126040_020--Hb_003685_060 Hb_126040_020--Hb_000022_270 Hb_126040_020--Hb_004981_020 Hb_126040_020--Hb_143766_040 Hb_003685_060--Hb_000022_270 Hb_003685_060--Hb_094462_010 Hb_003685_060--Hb_004981_020 Hb_000022_270--Hb_094462_010 Hb_001675_210 Hb_001675_210 Hb_000022_270--Hb_001675_210 Hb_004981_020--Hb_143766_040 Hb_007337_010 Hb_007337_010 Hb_004981_020--Hb_007337_010 Hb_187247_010 Hb_187247_010 Hb_004981_020--Hb_187247_010 Hb_061590_010 Hb_061590_010 Hb_004981_020--Hb_061590_010 Hb_005726_030 Hb_005726_030 Hb_004981_020--Hb_005726_030 Hb_143766_040--Hb_007337_010 Hb_143766_040--Hb_187247_010 Hb_143766_040--Hb_061590_010 Hb_143766_040--Hb_005726_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0497537 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.886243 0

CAGE analysis