Hb_003685_060

Information

Type -
Description -
Location Contig3685: 89409-93724
Sequence    

Annotation

kegg
ID egr:104421624
description laccase-15-like
nr
ID XP_012085931.1
description PREDICTED: laccase-15 [Jatropha curcas]
swissprot
ID Q9FY79
description Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 SV=1
trembl
ID A0A058ZT69
description Laccase OS=Eucalyptus grandis GN=EUGRSUZ_L01441 PE=3 SV=1
Gene Ontology
ID GO:0048046
description laccase-15-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37898: 92871-93642
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003685_060 0.0 - - PREDICTED: laccase-15 [Jatropha curcas]
2 Hb_000022_270 0.0025542283 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001604_140 0.0028372072 - - PREDICTED: ABC transporter G family member 10-like [Populus euphratica]
4 Hb_000201_080 0.0075386423 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_126040_020 0.0125424995 - - -
6 Hb_094462_010 0.035918546 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
7 Hb_004981_020 0.0477219565 - - PREDICTED: uncharacterized protein LOC103706119 [Phoenix dactylifera]
8 Hb_001675_210 0.0479153556 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
9 Hb_143766_040 0.0506152461 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
10 Hb_007337_010 0.0520513815 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
11 Hb_000419_080 0.0559498385 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
12 Hb_001032_060 0.0563421107 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
13 Hb_000563_070 0.0630560361 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Sesamum indicum]
14 Hb_187247_010 0.0633835936 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
15 Hb_005747_020 0.0703970267 - - bacterial-induced peroxidase [Gossypium schwendimanii]
16 Hb_028013_010 0.0715393043 - - alcohol dehydrogenase, putative [Ricinus communis]
17 Hb_018709_010 0.072290074 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
18 Hb_000264_250 0.073526761 - - thioredoxin family protein [Arabidopsis thaliana]
19 Hb_061590_010 0.075956001 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
20 Hb_004592_020 0.0764052581 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003685_060 Hb_003685_060 Hb_000022_270 Hb_000022_270 Hb_003685_060--Hb_000022_270 Hb_001604_140 Hb_001604_140 Hb_003685_060--Hb_001604_140 Hb_000201_080 Hb_000201_080 Hb_003685_060--Hb_000201_080 Hb_126040_020 Hb_126040_020 Hb_003685_060--Hb_126040_020 Hb_094462_010 Hb_094462_010 Hb_003685_060--Hb_094462_010 Hb_004981_020 Hb_004981_020 Hb_003685_060--Hb_004981_020 Hb_000022_270--Hb_001604_140 Hb_000022_270--Hb_000201_080 Hb_000022_270--Hb_126040_020 Hb_000022_270--Hb_094462_010 Hb_001675_210 Hb_001675_210 Hb_000022_270--Hb_001675_210 Hb_001604_140--Hb_000201_080 Hb_001604_140--Hb_126040_020 Hb_001604_140--Hb_094462_010 Hb_001604_140--Hb_004981_020 Hb_000201_080--Hb_126040_020 Hb_000201_080--Hb_004981_020 Hb_143766_040 Hb_143766_040 Hb_000201_080--Hb_143766_040 Hb_126040_020--Hb_004981_020 Hb_126040_020--Hb_143766_040 Hb_000563_070 Hb_000563_070 Hb_094462_010--Hb_000563_070 Hb_000264_250 Hb_000264_250 Hb_094462_010--Hb_000264_250 Hb_000419_080 Hb_000419_080 Hb_094462_010--Hb_000419_080 Hb_004981_020--Hb_143766_040 Hb_007337_010 Hb_007337_010 Hb_004981_020--Hb_007337_010 Hb_187247_010 Hb_187247_010 Hb_004981_020--Hb_187247_010 Hb_061590_010 Hb_061590_010 Hb_004981_020--Hb_061590_010 Hb_005726_030 Hb_005726_030 Hb_004981_020--Hb_005726_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0333922 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.550297 0

CAGE analysis