Hb_001604_140

Information

Type -
Description -
Location Contig1604: 159085-160905
Sequence    

Annotation

kegg
ID pop:POPTR_0011s11340g
description POPTRDRAFT_771759; ABC transporter family protein
nr
ID XP_011029552.1
description PREDICTED: ABC transporter G family member 10-like [Populus euphratica]
swissprot
ID Q9MAH4
description ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1
trembl
ID B9I1V7
description ABC transporter family protein OS=Populus trichocarpa GN=POPTR_0011s11340g PE=3 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 10-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001604_140 0.0 - - PREDICTED: ABC transporter G family member 10-like [Populus euphratica]
2 Hb_003685_060 0.0028372072 - - PREDICTED: laccase-15 [Jatropha curcas]
3 Hb_000201_080 0.0047017337 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
4 Hb_000022_270 0.0053913233 - - conserved hypothetical protein [Ricinus communis]
5 Hb_126040_020 0.0097063353 - - -
6 Hb_094462_010 0.038745609 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
7 Hb_004981_020 0.0449054944 - - PREDICTED: uncharacterized protein LOC103706119 [Phoenix dactylifera]
8 Hb_143766_040 0.0478017019 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
9 Hb_001675_210 0.0479024548 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
10 Hb_007337_010 0.0492393686 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
11 Hb_001032_060 0.057940936 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
12 Hb_000419_080 0.0580352611 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
13 Hb_187247_010 0.0605856938 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
14 Hb_000563_070 0.0658654916 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Sesamum indicum]
15 Hb_028013_010 0.0713850322 - - alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_018709_010 0.0723066654 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
17 Hb_005747_020 0.0729993696 - - bacterial-induced peroxidase [Gossypium schwendimanii]
18 Hb_061590_010 0.073178336 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
19 Hb_005726_030 0.0744307635 - - hypothetical protein CISIN_1g020511mg [Citrus sinensis]
20 Hb_000264_250 0.076327681 - - thioredoxin family protein [Arabidopsis thaliana]

Gene co-expression network

sample Hb_001604_140 Hb_001604_140 Hb_003685_060 Hb_003685_060 Hb_001604_140--Hb_003685_060 Hb_000201_080 Hb_000201_080 Hb_001604_140--Hb_000201_080 Hb_000022_270 Hb_000022_270 Hb_001604_140--Hb_000022_270 Hb_126040_020 Hb_126040_020 Hb_001604_140--Hb_126040_020 Hb_094462_010 Hb_094462_010 Hb_001604_140--Hb_094462_010 Hb_004981_020 Hb_004981_020 Hb_001604_140--Hb_004981_020 Hb_003685_060--Hb_000022_270 Hb_003685_060--Hb_000201_080 Hb_003685_060--Hb_126040_020 Hb_003685_060--Hb_094462_010 Hb_003685_060--Hb_004981_020 Hb_000201_080--Hb_126040_020 Hb_000201_080--Hb_000022_270 Hb_000201_080--Hb_004981_020 Hb_143766_040 Hb_143766_040 Hb_000201_080--Hb_143766_040 Hb_000022_270--Hb_126040_020 Hb_000022_270--Hb_094462_010 Hb_001675_210 Hb_001675_210 Hb_000022_270--Hb_001675_210 Hb_126040_020--Hb_004981_020 Hb_126040_020--Hb_143766_040 Hb_000563_070 Hb_000563_070 Hb_094462_010--Hb_000563_070 Hb_000264_250 Hb_000264_250 Hb_094462_010--Hb_000264_250 Hb_000419_080 Hb_000419_080 Hb_094462_010--Hb_000419_080 Hb_004981_020--Hb_143766_040 Hb_007337_010 Hb_007337_010 Hb_004981_020--Hb_007337_010 Hb_187247_010 Hb_187247_010 Hb_004981_020--Hb_187247_010 Hb_061590_010 Hb_061590_010 Hb_004981_020--Hb_061590_010 Hb_005726_030 Hb_005726_030 Hb_004981_020--Hb_005726_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.027304 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.463183 0

CAGE analysis