Hb_004981_020

Information

Type -
Description -
Location Contig4981: 7700-18271
Sequence    

Annotation

kegg
ID pda:103706119
description uncharacterized LOC103706119
nr
ID XP_008788347.1
description PREDICTED: uncharacterized protein LOC103706119 [Phoenix dactylifera]
swissprot
ID P48979
description Polygalacturonase OS=Prunus persica PE=2 SV=1
trembl
ID B9SSX6
description Polygalacturonase, putative OS=Ricinus communis GN=RCOM_1267870 PE=3 SV=1
Gene Ontology
ID GO:0005576
description polygalacturonase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004981_020 0.0 - - PREDICTED: uncharacterized protein LOC103706119 [Phoenix dactylifera]
2 Hb_143766_040 0.0029221789 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
3 Hb_007337_010 0.0043741476 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
4 Hb_187247_010 0.0158682907 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
5 Hb_061590_010 0.028705359 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
6 Hb_005726_030 0.0299871993 - - hypothetical protein CISIN_1g020511mg [Citrus sinensis]
7 Hb_126040_020 0.0352540973 - - -
8 Hb_000201_080 0.0402335676 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
9 Hb_001604_140 0.0449054944 - - PREDICTED: ABC transporter G family member 10-like [Populus euphratica]
10 Hb_003685_060 0.0477219565 - - PREDICTED: laccase-15 [Jatropha curcas]
11 Hb_000022_270 0.050255694 - - conserved hypothetical protein [Ricinus communis]
12 Hb_106528_020 0.0521053046 - - Cationic peroxidase 2 precursor [Theobroma cacao]
13 Hb_038238_010 0.061721886 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
14 Hb_007437_010 0.0642976363 - - Polygalacturonase precursor, putative [Ricinus communis]
15 Hb_010358_010 0.0647198198 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
16 Hb_001675_210 0.0664354875 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 8-like [Jatropha curcas]
17 Hb_020141_020 0.0676164992 - - -
18 Hb_000828_030 0.0739698828 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
19 Hb_006415_020 0.0743320219 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Jatropha curcas]
20 Hb_005433_050 0.0782855356 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]

Gene co-expression network

sample Hb_004981_020 Hb_004981_020 Hb_143766_040 Hb_143766_040 Hb_004981_020--Hb_143766_040 Hb_007337_010 Hb_007337_010 Hb_004981_020--Hb_007337_010 Hb_187247_010 Hb_187247_010 Hb_004981_020--Hb_187247_010 Hb_061590_010 Hb_061590_010 Hb_004981_020--Hb_061590_010 Hb_005726_030 Hb_005726_030 Hb_004981_020--Hb_005726_030 Hb_126040_020 Hb_126040_020 Hb_004981_020--Hb_126040_020 Hb_143766_040--Hb_007337_010 Hb_143766_040--Hb_187247_010 Hb_143766_040--Hb_061590_010 Hb_143766_040--Hb_005726_030 Hb_143766_040--Hb_126040_020 Hb_007337_010--Hb_187247_010 Hb_007337_010--Hb_061590_010 Hb_007337_010--Hb_005726_030 Hb_007337_010--Hb_126040_020 Hb_187247_010--Hb_061590_010 Hb_187247_010--Hb_005726_030 Hb_106528_020 Hb_106528_020 Hb_187247_010--Hb_106528_020 Hb_061590_010--Hb_005726_030 Hb_007437_010 Hb_007437_010 Hb_061590_010--Hb_007437_010 Hb_005726_030--Hb_007437_010 Hb_000201_080 Hb_000201_080 Hb_126040_020--Hb_000201_080 Hb_001604_140 Hb_001604_140 Hb_126040_020--Hb_001604_140 Hb_003685_060 Hb_003685_060 Hb_126040_020--Hb_003685_060 Hb_000022_270 Hb_000022_270 Hb_126040_020--Hb_000022_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0821386 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.34078 0

CAGE analysis