Hb_005747_040

Information

Type -
Description -
Location Contig5747: 30881-31508
Sequence    

Annotation

kegg
ID ath:AT5G39580
description peroxidase 62
nr
ID XP_009794697.1
description PREDICTED: peroxidase N1-like, partial [Nicotiana sylvestris]
swissprot
ID P15984
description Peroxidase (Fragment) OS=Triticum aestivum PE=2 SV=1
trembl
ID F4KEH2
description Peroxidase OS=Arabidopsis thaliana GN=At5g39580 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005747_040 0.0 - - PREDICTED: peroxidase N1-like, partial [Nicotiana sylvestris]
2 Hb_106528_010 0.0015126575 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
3 Hb_002551_010 0.0111949754 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_001114_290 0.0189471418 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000264_250 0.0220648759 - - thioredoxin family protein [Arabidopsis thaliana]
6 Hb_000563_070 0.0326166306 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Sesamum indicum]
7 Hb_173102_010 0.0373321369 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
8 Hb_005747_020 0.0406943799 - - bacterial-induced peroxidase [Gossypium schwendimanii]
9 Hb_001114_220 0.0534754902 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
10 Hb_002997_010 0.0548136538 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Malus domestica]
11 Hb_122025_010 0.0557434959 - - hypothetical protein POPTR_0003s052201g, partial [Populus trichocarpa]
12 Hb_094462_010 0.0597978253 - - hypothetical protein CISIN_1g033698mg [Citrus sinensis]
13 Hb_169426_010 0.061381609 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_005780_010 0.0616730762 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
15 Hb_180483_010 0.062255471 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_001410_090 0.0627425977 - - transferase, putative [Ricinus communis]
17 Hb_008367_020 0.0636655523 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 [Gossypium raimondii]
18 Hb_000419_080 0.0670439607 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
19 Hb_001032_060 0.0800146019 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
20 Hb_001114_300 0.085192369 - - hypothetical protein JCGZ_24970 [Jatropha curcas]

Gene co-expression network

sample Hb_005747_040 Hb_005747_040 Hb_106528_010 Hb_106528_010 Hb_005747_040--Hb_106528_010 Hb_002551_010 Hb_002551_010 Hb_005747_040--Hb_002551_010 Hb_001114_290 Hb_001114_290 Hb_005747_040--Hb_001114_290 Hb_000264_250 Hb_000264_250 Hb_005747_040--Hb_000264_250 Hb_000563_070 Hb_000563_070 Hb_005747_040--Hb_000563_070 Hb_173102_010 Hb_173102_010 Hb_005747_040--Hb_173102_010 Hb_106528_010--Hb_002551_010 Hb_106528_010--Hb_001114_290 Hb_106528_010--Hb_000264_250 Hb_106528_010--Hb_000563_070 Hb_106528_010--Hb_173102_010 Hb_002551_010--Hb_000264_250 Hb_002551_010--Hb_000563_070 Hb_002551_010--Hb_001114_290 Hb_005747_020 Hb_005747_020 Hb_002551_010--Hb_005747_020 Hb_001114_290--Hb_173102_010 Hb_002997_010 Hb_002997_010 Hb_001114_290--Hb_002997_010 Hb_001114_290--Hb_000264_250 Hb_000264_250--Hb_000563_070 Hb_000264_250--Hb_005747_020 Hb_094462_010 Hb_094462_010 Hb_000264_250--Hb_094462_010 Hb_000563_070--Hb_005747_020 Hb_000563_070--Hb_094462_010 Hb_173102_010--Hb_002997_010 Hb_169426_010 Hb_169426_010 Hb_173102_010--Hb_169426_010 Hb_005780_010 Hb_005780_010 Hb_173102_010--Hb_005780_010 Hb_180483_010 Hb_180483_010 Hb_173102_010--Hb_180483_010 Hb_008367_020 Hb_008367_020 Hb_173102_010--Hb_008367_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.32708 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 9.69248 0

CAGE analysis