Hb_008367_020

Information

Type -
Description -
Location Contig8367: 20847-21245
Sequence    

Annotation

kegg
ID dosa:Os09t0314800-00
description Os09g0314800; Similar to Receptor protein kinase PERK1.
nr
ID XP_012477188.1
description PREDICTED: proline-rich receptor-like protein kinase PERK1 [Gossypium raimondii]
swissprot
ID Q9ZNQ8
description Proline-rich receptor-like protein kinase PERK4 OS=Arabidopsis thaliana GN=PERK4 PE=1 SV=1
trembl
ID A0A0D2PJH2
description Gossypium raimondii chromosome 4, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_004G280200 PE=4 SV=1
Gene Ontology
ID GO:0004672
description proline-rich receptor-like protein kinase perk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008367_020 0.0 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 [Gossypium raimondii]
2 Hb_002997_010 0.0311179716 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Malus domestica]
3 Hb_169426_010 0.0316493281 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_005780_010 0.0317044489 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
5 Hb_180483_010 0.0318223566 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_173102_010 0.0360780873 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
7 Hb_001114_290 0.0480734712 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011495_020 0.0491464777 - - Pectinesterase-2 precursor, putative [Ricinus communis]
9 Hb_000905_140 0.0551397105 - - PREDICTED: protein gamma response 1 isoform X2 [Jatropha curcas]
10 Hb_000329_410 0.0587333506 - - Beta-expansin 3 precursor, putative [Ricinus communis]
11 Hb_000057_030 0.0590145128 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_002200_010 0.0594256906 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
13 Hb_000286_250 0.0608851281 desease resistance Gene Name: NB-ARC -
14 Hb_170761_010 0.0613893363 - - PREDICTED: uncharacterized protein LOC105787794 [Gossypium raimondii]
15 Hb_002081_250 0.0614752016 - - hypothetical protein POPTR_0009s08940g [Populus trichocarpa]
16 Hb_110822_020 0.0619553473 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
17 Hb_005747_040 0.0636655523 - - PREDICTED: peroxidase N1-like, partial [Nicotiana sylvestris]
18 Hb_106528_010 0.0649841564 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
19 Hb_001114_300 0.0672413011 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
20 Hb_021931_030 0.0730574609 - - hypothetical protein JCGZ_04974 [Jatropha curcas]

Gene co-expression network

sample Hb_008367_020 Hb_008367_020 Hb_002997_010 Hb_002997_010 Hb_008367_020--Hb_002997_010 Hb_169426_010 Hb_169426_010 Hb_008367_020--Hb_169426_010 Hb_005780_010 Hb_005780_010 Hb_008367_020--Hb_005780_010 Hb_180483_010 Hb_180483_010 Hb_008367_020--Hb_180483_010 Hb_173102_010 Hb_173102_010 Hb_008367_020--Hb_173102_010 Hb_001114_290 Hb_001114_290 Hb_008367_020--Hb_001114_290 Hb_002997_010--Hb_169426_010 Hb_002997_010--Hb_005780_010 Hb_002997_010--Hb_180483_010 Hb_002997_010--Hb_173102_010 Hb_002997_010--Hb_001114_290 Hb_169426_010--Hb_005780_010 Hb_169426_010--Hb_180483_010 Hb_169426_010--Hb_173102_010 Hb_011495_020 Hb_011495_020 Hb_169426_010--Hb_011495_020 Hb_005780_010--Hb_180483_010 Hb_005780_010--Hb_173102_010 Hb_005780_010--Hb_011495_020 Hb_180483_010--Hb_173102_010 Hb_180483_010--Hb_011495_020 Hb_173102_010--Hb_001114_290 Hb_005747_040 Hb_005747_040 Hb_001114_290--Hb_005747_040 Hb_106528_010 Hb_106528_010 Hb_001114_290--Hb_106528_010 Hb_002551_010 Hb_002551_010 Hb_001114_290--Hb_002551_010 Hb_000264_250 Hb_000264_250 Hb_001114_290--Hb_000264_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0844661 7.24406 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 36.3425 0

CAGE analysis