Hb_006196_020

Information

Type transcription factor
Description TF Family: NAC
Location Contig6196: 15180-18242
Sequence    

Annotation

kegg
ID pop:POPTR_0015s03700g
description POPTRDRAFT_574902; hypothetical protein
nr
ID XP_011009316.1
description PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
swissprot
ID Q9FLJ2
description NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1
trembl
ID B9IE38
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s03700g PE=4 SV=2
Gene Ontology
ID GO:0005634
description protein cup-shaped cotyledon 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006196_020 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
2 Hb_000160_230 0.0520949963 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
3 Hb_007810_140 0.0537585713 - - Ankyrin repeat-containing protein [Medicago truncatula]
4 Hb_002615_050 0.053912388 - - ATP-binding cassette transporter, putative [Ricinus communis]
5 Hb_042664_010 0.0557088182 - - hypothetical protein POPTR_0001s07640g, partial [Populus trichocarpa]
6 Hb_039342_030 0.0563744188 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000859_040 0.0639357672 - - Early nodulin 16 precursor, putative [Ricinus communis]
8 Hb_016172_010 0.0725969952 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
9 Hb_000488_040 0.0823094828 - - unnamed protein product [Vitis vinifera]
10 Hb_004564_010 0.0833357464 - - receptor-kinase, putative [Ricinus communis]
11 Hb_001032_060 0.0843721759 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
12 Hb_002900_020 0.0852301745 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
13 Hb_001410_090 0.0865763275 - - transferase, putative [Ricinus communis]
14 Hb_001081_020 0.0875004188 - - Cytochrome P450 76C2 [Triticum urartu]
15 Hb_018709_010 0.0911432954 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
16 Hb_002534_080 0.0920655011 - - zinc finger protein, putative [Ricinus communis]
17 Hb_000025_250 0.0922144129 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
18 Hb_011824_010 0.0925418304 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
19 Hb_000419_080 0.0967995495 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
20 Hb_010712_020 0.0969788438 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_006196_020 Hb_006196_020 Hb_000160_230 Hb_000160_230 Hb_006196_020--Hb_000160_230 Hb_007810_140 Hb_007810_140 Hb_006196_020--Hb_007810_140 Hb_002615_050 Hb_002615_050 Hb_006196_020--Hb_002615_050 Hb_042664_010 Hb_042664_010 Hb_006196_020--Hb_042664_010 Hb_039342_030 Hb_039342_030 Hb_006196_020--Hb_039342_030 Hb_000859_040 Hb_000859_040 Hb_006196_020--Hb_000859_040 Hb_000160_230--Hb_007810_140 Hb_000160_230--Hb_000859_040 Hb_000160_230--Hb_002615_050 Hb_011824_010 Hb_011824_010 Hb_000160_230--Hb_011824_010 Hb_010712_020 Hb_010712_020 Hb_000160_230--Hb_010712_020 Hb_007810_140--Hb_000859_040 Hb_007810_140--Hb_002615_050 Hb_007810_140--Hb_011824_010 Hb_139460_010 Hb_139460_010 Hb_007810_140--Hb_139460_010 Hb_002615_050--Hb_011824_010 Hb_002615_050--Hb_000859_040 Hb_002615_050--Hb_139460_010 Hb_001901_090 Hb_001901_090 Hb_042664_010--Hb_001901_090 Hb_042664_010--Hb_002615_050 Hb_042664_010--Hb_039342_030 Hb_002534_080 Hb_002534_080 Hb_042664_010--Hb_002534_080 Hb_008705_070 Hb_008705_070 Hb_042664_010--Hb_008705_070 Hb_016172_010 Hb_016172_010 Hb_039342_030--Hb_016172_010 Hb_039342_030--Hb_008705_070 Hb_039342_030--Hb_002615_050 Hb_039342_030--Hb_000160_230 Hb_001410_090 Hb_001410_090 Hb_000859_040--Hb_001410_090 Hb_001114_300 Hb_001114_300 Hb_000859_040--Hb_001114_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.531306 0.0699772 0.0593712 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.67517 0

CAGE analysis