Hb_002534_080

Information

Type -
Description -
Location Contig2534: 63618-65312
Sequence    

Annotation

kegg
ID rcu:RCOM_1471860
description zinc finger protein, putative
nr
ID XP_002514748.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q9CA68
description GDSL esterase/lipase At1g74460 OS=Arabidopsis thaliana GN=At1g74460 PE=2 SV=1
trembl
ID B9RLX9
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1471860 PE=4 SV=1
Gene Ontology
ID GO:0016788
description gdsl esterase lipase at1g74460

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002534_080 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_042664_010 0.0736929201 - - hypothetical protein POPTR_0001s07640g, partial [Populus trichocarpa]
3 Hb_005464_040 0.0746579265 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_027402_120 0.078522089 - - zinc finger protein, putative [Ricinus communis]
5 Hb_000025_250 0.0865125736 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
6 Hb_001901_090 0.0869064608 - - metal ion binding protein, putative [Ricinus communis]
7 Hb_002615_050 0.0899396502 - - ATP-binding cassette transporter, putative [Ricinus communis]
8 Hb_003891_060 0.0909047917 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]
9 Hb_004564_010 0.0909948793 - - receptor-kinase, putative [Ricinus communis]
10 Hb_006196_020 0.0920655011 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
11 Hb_018709_010 0.0958950654 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
12 Hb_178389_020 0.0973314238 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
13 Hb_000563_080 0.0977153166 - - -
14 Hb_001301_020 0.0978828932 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
15 Hb_002900_020 0.1015789162 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
16 Hb_000589_280 0.1020768885 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
17 Hb_003538_020 0.1026198276 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
18 Hb_000488_040 0.1028379301 - - unnamed protein product [Vitis vinifera]
19 Hb_004254_070 0.1031154001 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]
20 Hb_000446_100 0.1054689933 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_002534_080 Hb_002534_080 Hb_042664_010 Hb_042664_010 Hb_002534_080--Hb_042664_010 Hb_005464_040 Hb_005464_040 Hb_002534_080--Hb_005464_040 Hb_027402_120 Hb_027402_120 Hb_002534_080--Hb_027402_120 Hb_000025_250 Hb_000025_250 Hb_002534_080--Hb_000025_250 Hb_001901_090 Hb_001901_090 Hb_002534_080--Hb_001901_090 Hb_002615_050 Hb_002615_050 Hb_002534_080--Hb_002615_050 Hb_006196_020 Hb_006196_020 Hb_042664_010--Hb_006196_020 Hb_042664_010--Hb_001901_090 Hb_042664_010--Hb_002615_050 Hb_039342_030 Hb_039342_030 Hb_042664_010--Hb_039342_030 Hb_008705_070 Hb_008705_070 Hb_042664_010--Hb_008705_070 Hb_000563_080 Hb_000563_080 Hb_005464_040--Hb_000563_080 Hb_001301_020 Hb_001301_020 Hb_005464_040--Hb_001301_020 Hb_005464_040--Hb_000025_250 Hb_003188_020 Hb_003188_020 Hb_005464_040--Hb_003188_020 Hb_166232_010 Hb_166232_010 Hb_005464_040--Hb_166232_010 Hb_000446_100 Hb_000446_100 Hb_005464_040--Hb_000446_100 Hb_004564_010 Hb_004564_010 Hb_027402_120--Hb_004564_010 Hb_027402_120--Hb_002615_050 Hb_028013_010 Hb_028013_010 Hb_027402_120--Hb_028013_010 Hb_000488_040 Hb_000488_040 Hb_027402_120--Hb_000488_040 Hb_002758_040 Hb_002758_040 Hb_027402_120--Hb_002758_040 Hb_014034_020 Hb_014034_020 Hb_000025_250--Hb_014034_020 Hb_004254_070 Hb_004254_070 Hb_000025_250--Hb_004254_070 Hb_018709_010 Hb_018709_010 Hb_000025_250--Hb_018709_010 Hb_020141_020 Hb_020141_020 Hb_000025_250--Hb_020141_020 Hb_000025_250--Hb_000563_080 Hb_000503_040 Hb_000503_040 Hb_001901_090--Hb_000503_040 Hb_003253_020 Hb_003253_020 Hb_001901_090--Hb_003253_020 Hb_000513_110 Hb_000513_110 Hb_001901_090--Hb_000513_110 Hb_001901_090--Hb_005464_040 Hb_003891_060 Hb_003891_060 Hb_001901_090--Hb_003891_060 Hb_007810_140 Hb_007810_140 Hb_002615_050--Hb_007810_140 Hb_000160_230 Hb_000160_230 Hb_002615_050--Hb_000160_230 Hb_002615_050--Hb_006196_020 Hb_011824_010 Hb_011824_010 Hb_002615_050--Hb_011824_010 Hb_000859_040 Hb_000859_040 Hb_002615_050--Hb_000859_040 Hb_139460_010 Hb_139460_010 Hb_002615_050--Hb_139460_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.356761 0.0662084 0.138793 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0392023 0 0 5.16097 0

CAGE analysis