Hb_001301_020

Information

Type -
Description -
Location Contig1301: 33984-35590
Sequence    

Annotation

kegg
ID rcu:RCOM_0586420
description polygalacturonase, putative
nr
ID KDP46064.1
description hypothetical protein JCGZ_06575 [Jatropha curcas]
swissprot
ID Q08298
description Dehydration-responsive protein RD22 OS=Arabidopsis thaliana GN=RD22 PE=2 SV=1
trembl
ID A0A067LNK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06575 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001301_020 0.0 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
2 Hb_000563_080 0.0163119747 - - -
3 Hb_003188_020 0.0210788109 - - chitinase, putative [Ricinus communis]
4 Hb_000446_100 0.0290336909 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
5 Hb_004254_070 0.0329649721 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]
6 Hb_005464_040 0.0368252623 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_014034_020 0.0411540076 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
8 Hb_166232_010 0.04159361 - - hypothetical protein JCGZ_22831 [Jatropha curcas]
9 Hb_000500_190 0.0468606187 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
10 Hb_000025_250 0.0507975421 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
11 Hb_153208_010 0.0522402826 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
12 Hb_002553_170 0.0551374805 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
13 Hb_009568_010 0.0555251804 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
14 Hb_020141_020 0.0561800549 - - -
15 Hb_001930_060 0.056292443 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
16 Hb_001456_040 0.0609046504 - - NAD dependent epimerase/dehydratase, putative [Ricinus communis]
17 Hb_003334_080 0.0631249505 - - Reticuline oxidase precursor, putative [Ricinus communis]
18 Hb_002835_020 0.0644999158 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
19 Hb_000229_080 0.0704182001 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
20 Hb_002758_020 0.0707194908 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]

Gene co-expression network

sample Hb_001301_020 Hb_001301_020 Hb_000563_080 Hb_000563_080 Hb_001301_020--Hb_000563_080 Hb_003188_020 Hb_003188_020 Hb_001301_020--Hb_003188_020 Hb_000446_100 Hb_000446_100 Hb_001301_020--Hb_000446_100 Hb_004254_070 Hb_004254_070 Hb_001301_020--Hb_004254_070 Hb_005464_040 Hb_005464_040 Hb_001301_020--Hb_005464_040 Hb_014034_020 Hb_014034_020 Hb_001301_020--Hb_014034_020 Hb_000563_080--Hb_003188_020 Hb_000563_080--Hb_005464_040 Hb_166232_010 Hb_166232_010 Hb_000563_080--Hb_166232_010 Hb_000563_080--Hb_004254_070 Hb_000563_080--Hb_000446_100 Hb_003188_020--Hb_014034_020 Hb_003188_020--Hb_004254_070 Hb_003188_020--Hb_000446_100 Hb_153208_010 Hb_153208_010 Hb_003188_020--Hb_153208_010 Hb_000446_100--Hb_004254_070 Hb_000500_190 Hb_000500_190 Hb_000446_100--Hb_000500_190 Hb_000446_100--Hb_014034_020 Hb_001456_040 Hb_001456_040 Hb_000446_100--Hb_001456_040 Hb_004254_070--Hb_014034_020 Hb_004254_070--Hb_000500_190 Hb_000025_250 Hb_000025_250 Hb_004254_070--Hb_000025_250 Hb_005464_040--Hb_000025_250 Hb_005464_040--Hb_003188_020 Hb_005464_040--Hb_166232_010 Hb_005464_040--Hb_000446_100 Hb_014034_020--Hb_000500_190 Hb_014034_020--Hb_000025_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.754074 0.233444 0.415193 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 25.6796 0

CAGE analysis