Hb_000446_100

Information

Type -
Description -
Location Contig446: 144675-146492
Sequence    

Annotation

kegg
ID tcc:TCM_043319
description Major facilitator superfamily protein
nr
ID XP_012080984.1
description PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
swissprot
ID F4I9E1
description Protein NUCLEAR FUSION DEFECTIVE 4 OS=Arabidopsis thaliana GN=NFD4 PE=3 SV=1
trembl
ID A0A067K2P1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16170 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein nuclear fusion defective 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000446_100 0.0 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
2 Hb_004254_070 0.0202221851 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]
3 Hb_001301_020 0.0290336909 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
4 Hb_003188_020 0.0331316236 - - chitinase, putative [Ricinus communis]
5 Hb_000500_190 0.0368161977 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
6 Hb_014034_020 0.0369199378 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
7 Hb_001456_040 0.0424030279 - - NAD dependent epimerase/dehydratase, putative [Ricinus communis]
8 Hb_000563_080 0.0441663281 - - -
9 Hb_009568_010 0.0468334503 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
10 Hb_020480_050 0.0486469022 - - putative wall-associated kinase family protein [Populus trichocarpa]
11 Hb_005464_040 0.0567069074 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000025_250 0.0576302176 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
13 Hb_002553_170 0.0576449932 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
14 Hb_003334_080 0.057846476 - - Reticuline oxidase precursor, putative [Ricinus communis]
15 Hb_000229_080 0.0603677106 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
16 Hb_153208_010 0.0615463756 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
17 Hb_000141_070 0.0638513243 - - l-lactate dehydrogenase, putative [Ricinus communis]
18 Hb_007483_040 0.0646610662 - - PREDICTED: protein SRG1-like [Jatropha curcas]
19 Hb_166232_010 0.0651053098 - - hypothetical protein JCGZ_22831 [Jatropha curcas]
20 Hb_001930_060 0.0701743888 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_000446_100 Hb_000446_100 Hb_004254_070 Hb_004254_070 Hb_000446_100--Hb_004254_070 Hb_001301_020 Hb_001301_020 Hb_000446_100--Hb_001301_020 Hb_003188_020 Hb_003188_020 Hb_000446_100--Hb_003188_020 Hb_000500_190 Hb_000500_190 Hb_000446_100--Hb_000500_190 Hb_014034_020 Hb_014034_020 Hb_000446_100--Hb_014034_020 Hb_001456_040 Hb_001456_040 Hb_000446_100--Hb_001456_040 Hb_004254_070--Hb_014034_020 Hb_004254_070--Hb_003188_020 Hb_004254_070--Hb_000500_190 Hb_004254_070--Hb_001301_020 Hb_000025_250 Hb_000025_250 Hb_004254_070--Hb_000025_250 Hb_000563_080 Hb_000563_080 Hb_001301_020--Hb_000563_080 Hb_001301_020--Hb_003188_020 Hb_005464_040 Hb_005464_040 Hb_001301_020--Hb_005464_040 Hb_001301_020--Hb_014034_020 Hb_003188_020--Hb_000563_080 Hb_003188_020--Hb_014034_020 Hb_153208_010 Hb_153208_010 Hb_003188_020--Hb_153208_010 Hb_000229_080 Hb_000229_080 Hb_000500_190--Hb_000229_080 Hb_000500_190--Hb_014034_020 Hb_000500_190--Hb_003188_020 Hb_000500_190--Hb_001301_020 Hb_014034_020--Hb_000025_250 Hb_020480_050 Hb_020480_050 Hb_001456_040--Hb_020480_050 Hb_009568_010 Hb_009568_010 Hb_001456_040--Hb_009568_010 Hb_001456_040--Hb_000500_190 Hb_000141_070 Hb_000141_070 Hb_001456_040--Hb_000141_070 Hb_001456_040--Hb_004254_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0693516 0.0409871 0.0323701 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.54833 0

CAGE analysis