Hb_009568_010

Information

Type -
Description -
Location Contig9568: 4102-5980
Sequence    

Annotation

kegg
ID pop:POPTR_0001s46700g
description POPTRDRAFT_177383; hypothetical protein
nr
ID XP_002299029.2
description hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
swissprot
ID Q33DQ2
description Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1
trembl
ID B9GGJ0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s46700g PE=4 SV=2
Gene Ontology
ID GO:0016614
description tetrahydrocannabinolic acid synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63562: 4839-6145
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009568_010 0.0 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
2 Hb_000141_070 0.0428354775 - - l-lactate dehydrogenase, putative [Ricinus communis]
3 Hb_007483_040 0.0434615357 - - PREDICTED: protein SRG1-like [Jatropha curcas]
4 Hb_003334_080 0.0442055926 - - Reticuline oxidase precursor, putative [Ricinus communis]
5 Hb_000446_100 0.0468334503 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
6 Hb_001456_040 0.0494448901 - - NAD dependent epimerase/dehydratase, putative [Ricinus communis]
7 Hb_020480_050 0.0516577778 - - putative wall-associated kinase family protein [Populus trichocarpa]
8 Hb_001301_020 0.0555251804 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
9 Hb_002553_170 0.0555284119 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
10 Hb_001930_060 0.0572632706 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
11 Hb_058620_050 0.0584245398 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
12 Hb_000712_070 0.0620982481 - - conserved hypothetical protein [Ricinus communis]
13 Hb_166232_010 0.0625192117 - - hypothetical protein JCGZ_22831 [Jatropha curcas]
14 Hb_003188_020 0.0642420635 - - chitinase, putative [Ricinus communis]
15 Hb_004254_070 0.0662211923 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]
16 Hb_058620_040 0.0670164271 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
17 Hb_005614_040 0.0675144697 - - unnamed protein product [Coffea canephora]
18 Hb_000563_080 0.0686998448 - - -
19 Hb_000500_190 0.069421863 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
20 Hb_002818_080 0.071208309 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA20, putative [Ricinus communis]

Gene co-expression network

sample Hb_009568_010 Hb_009568_010 Hb_000141_070 Hb_000141_070 Hb_009568_010--Hb_000141_070 Hb_007483_040 Hb_007483_040 Hb_009568_010--Hb_007483_040 Hb_003334_080 Hb_003334_080 Hb_009568_010--Hb_003334_080 Hb_000446_100 Hb_000446_100 Hb_009568_010--Hb_000446_100 Hb_001456_040 Hb_001456_040 Hb_009568_010--Hb_001456_040 Hb_020480_050 Hb_020480_050 Hb_009568_010--Hb_020480_050 Hb_000141_070--Hb_003334_080 Hb_058620_050 Hb_058620_050 Hb_000141_070--Hb_058620_050 Hb_000141_070--Hb_007483_040 Hb_058620_040 Hb_058620_040 Hb_000141_070--Hb_058620_040 Hb_000141_070--Hb_001456_040 Hb_010697_030 Hb_010697_030 Hb_007483_040--Hb_010697_030 Hb_007483_040--Hb_020480_050 Hb_007483_040--Hb_003334_080 Hb_000712_070 Hb_000712_070 Hb_007483_040--Hb_000712_070 Hb_003334_080--Hb_058620_040 Hb_002835_020 Hb_002835_020 Hb_003334_080--Hb_002835_020 Hb_002553_170 Hb_002553_170 Hb_003334_080--Hb_002553_170 Hb_003334_080--Hb_058620_050 Hb_004254_070 Hb_004254_070 Hb_000446_100--Hb_004254_070 Hb_001301_020 Hb_001301_020 Hb_000446_100--Hb_001301_020 Hb_003188_020 Hb_003188_020 Hb_000446_100--Hb_003188_020 Hb_000500_190 Hb_000500_190 Hb_000446_100--Hb_000500_190 Hb_014034_020 Hb_014034_020 Hb_000446_100--Hb_014034_020 Hb_000446_100--Hb_001456_040 Hb_001456_040--Hb_020480_050 Hb_001456_040--Hb_000500_190 Hb_001456_040--Hb_004254_070 Hb_020480_050--Hb_000446_100 Hb_020480_050--Hb_010697_030 Hb_020480_050--Hb_004254_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.04908 0.0611998 0.0731557 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.34073 0

CAGE analysis