Hb_020480_050

Information

Type -
Description -
Location Contig20480: 31501-34731
Sequence    

Annotation

kegg
ID pop:POPTR_0003s18490g
description POPTRDRAFT_854085; putative wall-associated kinase family protein
nr
ID XP_002304841.2
description putative wall-associated kinase family protein [Populus trichocarpa]
swissprot
ID Q9C9L5
description Wall-associated receptor kinase-like 9 OS=Arabidopsis thaliana GN=WAKL9 PE=2 SV=1
trembl
ID B9GXW0
description Putative wall-associated kinase family protein OS=Populus trichocarpa GN=POPTR_0003s18490g PE=4 SV=2
Gene Ontology
ID GO:0004672
description wall-associated receptor kinase-like 22

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020480_050 0.0 - - putative wall-associated kinase family protein [Populus trichocarpa]
2 Hb_001456_040 0.0410153173 - - NAD dependent epimerase/dehydratase, putative [Ricinus communis]
3 Hb_007483_040 0.0422227396 - - PREDICTED: protein SRG1-like [Jatropha curcas]
4 Hb_000446_100 0.0486469022 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
5 Hb_009568_010 0.0516577778 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
6 Hb_010697_030 0.0518087525 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
7 Hb_004254_070 0.0608244389 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]
8 Hb_000141_070 0.0608278143 - - l-lactate dehydrogenase, putative [Ricinus communis]
9 Hb_000500_190 0.0631560524 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
10 Hb_003334_080 0.0655141139 - - Reticuline oxidase precursor, putative [Ricinus communis]
11 Hb_014034_020 0.0731490476 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
12 Hb_001301_020 0.07543982 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
13 Hb_003188_020 0.0758278745 - - chitinase, putative [Ricinus communis]
14 Hb_000229_080 0.0763531266 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
15 Hb_002553_170 0.0778424094 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
16 Hb_058620_050 0.0812751536 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
17 Hb_058620_040 0.0838658722 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
18 Hb_000712_070 0.0839789652 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000503_040 0.0850012103 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
20 Hb_003891_060 0.0886239474 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]

Gene co-expression network

sample Hb_020480_050 Hb_020480_050 Hb_001456_040 Hb_001456_040 Hb_020480_050--Hb_001456_040 Hb_007483_040 Hb_007483_040 Hb_020480_050--Hb_007483_040 Hb_000446_100 Hb_000446_100 Hb_020480_050--Hb_000446_100 Hb_009568_010 Hb_009568_010 Hb_020480_050--Hb_009568_010 Hb_010697_030 Hb_010697_030 Hb_020480_050--Hb_010697_030 Hb_004254_070 Hb_004254_070 Hb_020480_050--Hb_004254_070 Hb_001456_040--Hb_000446_100 Hb_001456_040--Hb_009568_010 Hb_000500_190 Hb_000500_190 Hb_001456_040--Hb_000500_190 Hb_000141_070 Hb_000141_070 Hb_001456_040--Hb_000141_070 Hb_001456_040--Hb_004254_070 Hb_007483_040--Hb_010697_030 Hb_007483_040--Hb_009568_010 Hb_007483_040--Hb_000141_070 Hb_003334_080 Hb_003334_080 Hb_007483_040--Hb_003334_080 Hb_000712_070 Hb_000712_070 Hb_007483_040--Hb_000712_070 Hb_000446_100--Hb_004254_070 Hb_001301_020 Hb_001301_020 Hb_000446_100--Hb_001301_020 Hb_003188_020 Hb_003188_020 Hb_000446_100--Hb_003188_020 Hb_000446_100--Hb_000500_190 Hb_014034_020 Hb_014034_020 Hb_000446_100--Hb_014034_020 Hb_009568_010--Hb_000141_070 Hb_009568_010--Hb_003334_080 Hb_009568_010--Hb_000446_100 Hb_000503_040 Hb_000503_040 Hb_010697_030--Hb_000503_040 Hb_000836_400 Hb_000836_400 Hb_010697_030--Hb_000836_400 Hb_010697_030--Hb_000141_070 Hb_010697_030--Hb_009568_010 Hb_004254_070--Hb_014034_020 Hb_004254_070--Hb_003188_020 Hb_004254_070--Hb_000500_190 Hb_004254_070--Hb_001301_020 Hb_000025_250 Hb_000025_250 Hb_004254_070--Hb_000025_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0223645 0.0386927 0.0128624 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.25717 0

CAGE analysis