Hb_004254_070

Information

Type transcription factor
Description TF Family: NAC
Location Contig4254: 63067-66035
Sequence    

Annotation

kegg
ID pop:POPTR_0015s03700g
description POPTRDRAFT_574902; hypothetical protein
nr
ID XP_002321475.2
description hypothetical protein POPTR_0015s03700g [Populus trichocarpa]
swissprot
ID Q9FLJ2
description NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1
trembl
ID B9IE38
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s03700g PE=4 SV=2
Gene Ontology
ID GO:0003677
description protein cup-shaped cotyledon 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004254_070 0.0 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]
2 Hb_014034_020 0.0194215508 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
3 Hb_000446_100 0.0202221851 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
4 Hb_003188_020 0.0290114256 - - chitinase, putative [Ricinus communis]
5 Hb_000500_190 0.0312385754 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
6 Hb_001301_020 0.0329649721 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
7 Hb_000025_250 0.0430534386 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
8 Hb_000563_080 0.0432547429 - - -
9 Hb_001456_040 0.0520055424 - - NAD dependent epimerase/dehydratase, putative [Ricinus communis]
10 Hb_000229_080 0.0534375536 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
11 Hb_153208_010 0.0570196097 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
12 Hb_005464_040 0.0571075437 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_020141_020 0.0596386788 - - -
14 Hb_020480_050 0.0608244389 - - putative wall-associated kinase family protein [Populus trichocarpa]
15 Hb_002553_170 0.0662144269 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
16 Hb_009568_010 0.0662211923 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
17 Hb_002944_020 0.0684896113 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
18 Hb_003334_080 0.070443447 - - Reticuline oxidase precursor, putative [Ricinus communis]
19 Hb_166232_010 0.0728674567 - - hypothetical protein JCGZ_22831 [Jatropha curcas]
20 Hb_002835_020 0.0746290288 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]

Gene co-expression network

sample Hb_004254_070 Hb_004254_070 Hb_014034_020 Hb_014034_020 Hb_004254_070--Hb_014034_020 Hb_000446_100 Hb_000446_100 Hb_004254_070--Hb_000446_100 Hb_003188_020 Hb_003188_020 Hb_004254_070--Hb_003188_020 Hb_000500_190 Hb_000500_190 Hb_004254_070--Hb_000500_190 Hb_001301_020 Hb_001301_020 Hb_004254_070--Hb_001301_020 Hb_000025_250 Hb_000025_250 Hb_004254_070--Hb_000025_250 Hb_014034_020--Hb_003188_020 Hb_014034_020--Hb_000500_190 Hb_014034_020--Hb_000446_100 Hb_014034_020--Hb_001301_020 Hb_014034_020--Hb_000025_250 Hb_000446_100--Hb_001301_020 Hb_000446_100--Hb_003188_020 Hb_000446_100--Hb_000500_190 Hb_001456_040 Hb_001456_040 Hb_000446_100--Hb_001456_040 Hb_003188_020--Hb_001301_020 Hb_000563_080 Hb_000563_080 Hb_003188_020--Hb_000563_080 Hb_153208_010 Hb_153208_010 Hb_003188_020--Hb_153208_010 Hb_000229_080 Hb_000229_080 Hb_000500_190--Hb_000229_080 Hb_000500_190--Hb_003188_020 Hb_000500_190--Hb_001301_020 Hb_001301_020--Hb_000563_080 Hb_005464_040 Hb_005464_040 Hb_001301_020--Hb_005464_040 Hb_018709_010 Hb_018709_010 Hb_000025_250--Hb_018709_010 Hb_020141_020 Hb_020141_020 Hb_000025_250--Hb_020141_020 Hb_000025_250--Hb_005464_040 Hb_000025_250--Hb_000563_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.108106 0.0465966 0.0303821 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.34921 0

CAGE analysis