Hb_000500_190

Information

Type -
Description -
Location Contig500: 140115-143588
Sequence    

Annotation

kegg
ID tcc:TCM_029575
description Senescence-related gene 1
nr
ID KDP21184.1
description hypothetical protein JCGZ_21655 [Jatropha curcas]
swissprot
ID Q39224
description Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1
trembl
ID A0A067JNW1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21655 PE=3 SV=1
Gene Ontology
ID GO:0016706
description protein srg1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45749: 142864-143143
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000500_190 0.0 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
2 Hb_000229_080 0.0286968716 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
3 Hb_014034_020 0.0301260358 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
4 Hb_004254_070 0.0312385754 transcription factor TF Family: NAC hypothetical protein POPTR_0015s03700g [Populus trichocarpa]
5 Hb_003188_020 0.0363150794 - - chitinase, putative [Ricinus communis]
6 Hb_000446_100 0.0368161977 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
7 Hb_001301_020 0.0468606187 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
8 Hb_153208_010 0.0504466696 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
9 Hb_001456_040 0.0507655003 - - NAD dependent epimerase/dehydratase, putative [Ricinus communis]
10 Hb_003334_080 0.0546221301 - - Reticuline oxidase precursor, putative [Ricinus communis]
11 Hb_000563_080 0.0548119344 - - -
12 Hb_000563_060 0.055478041 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
13 Hb_002835_020 0.0558582323 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
14 Hb_002553_170 0.0574929136 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
15 Hb_000025_250 0.058666014 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
16 Hb_002944_020 0.0611279674 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
17 Hb_000388_160 0.0621659259 - - xyloglucan endo-1 family protein [Populus trichocarpa]
18 Hb_039363_010 0.0628621068 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
19 Hb_020480_050 0.0631560524 - - putative wall-associated kinase family protein [Populus trichocarpa]
20 Hb_020141_020 0.0654571113 - - -

Gene co-expression network

sample Hb_000500_190 Hb_000500_190 Hb_000229_080 Hb_000229_080 Hb_000500_190--Hb_000229_080 Hb_014034_020 Hb_014034_020 Hb_000500_190--Hb_014034_020 Hb_004254_070 Hb_004254_070 Hb_000500_190--Hb_004254_070 Hb_003188_020 Hb_003188_020 Hb_000500_190--Hb_003188_020 Hb_000446_100 Hb_000446_100 Hb_000500_190--Hb_000446_100 Hb_001301_020 Hb_001301_020 Hb_000500_190--Hb_001301_020 Hb_000229_080--Hb_014034_020 Hb_000229_080--Hb_004254_070 Hb_000563_060 Hb_000563_060 Hb_000229_080--Hb_000563_060 Hb_000229_080--Hb_003188_020 Hb_000229_080--Hb_000446_100 Hb_014034_020--Hb_004254_070 Hb_014034_020--Hb_003188_020 Hb_014034_020--Hb_000446_100 Hb_014034_020--Hb_001301_020 Hb_000025_250 Hb_000025_250 Hb_014034_020--Hb_000025_250 Hb_004254_070--Hb_000446_100 Hb_004254_070--Hb_003188_020 Hb_004254_070--Hb_001301_020 Hb_004254_070--Hb_000025_250 Hb_003188_020--Hb_001301_020 Hb_000563_080 Hb_000563_080 Hb_003188_020--Hb_000563_080 Hb_003188_020--Hb_000446_100 Hb_153208_010 Hb_153208_010 Hb_003188_020--Hb_153208_010 Hb_000446_100--Hb_001301_020 Hb_001456_040 Hb_001456_040 Hb_000446_100--Hb_001456_040 Hb_001301_020--Hb_000563_080 Hb_005464_040 Hb_005464_040 Hb_001301_020--Hb_005464_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.09802 0.538917 0.293476 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 43.0467 0.0526843

CAGE analysis