Hb_000563_060

Information

Type -
Description -
Location Contig563: 21163-24839
Sequence    

Annotation

kegg
ID gmx:100814569
description MLP-like protein 34-like
nr
ID XP_006586622.1
description PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
swissprot
ID O24248
description Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 PE=1 SV=1
trembl
ID F6H6U6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0077g01570 PE=4 SV=1
Gene Ontology
ID GO:0006952
description major allergen pru

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48880: 23978-24902
cDNA
(Sanger)
(ID:Location)		 002_F09.ab1: 24120-24697 , 017_I15.ab1: 24118-24902 , 018_F15.ab1: 24119-24906 , 018_I16.ab1: 24119-24902 , 029_G10.ab1: 24118-24902 , 033_B23.ab1: 24119-24905 , 033_F13.ab1: 24119-24902 , 035_M11.ab1: 24119-24902 , 036_E23.ab1: 23978-24905 , 036_N04.ab1: 24120-24697 , 043_B07.ab1: 24113-24902 , 045_J08.ab1: 24119-24905

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_060 0.0 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
2 Hb_004190_030 0.0265743341 - - unnamed protein product [Vitis vinifera]
3 Hb_002835_020 0.0335369026 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
4 Hb_001140_330 0.0367408442 - - PREDICTED: uncharacterized protein LOC105142675 [Populus euphratica]
5 Hb_039363_010 0.0374281047 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
6 Hb_003119_110 0.0399969913 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
7 Hb_153208_010 0.0471655824 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
8 Hb_000388_160 0.0477781374 - - xyloglucan endo-1 family protein [Populus trichocarpa]
9 Hb_004267_050 0.0489289709 - - hypothetical protein JCGZ_04357 [Jatropha curcas]
10 Hb_002553_170 0.051424179 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
11 Hb_000500_190 0.055478041 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
12 Hb_109163_010 0.0559141731 - - polyphenol oxidase [Hevea brasiliensis]
13 Hb_002944_020 0.0562925746 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
14 Hb_010358_010 0.0566948988 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
15 Hb_000229_080 0.0588234499 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
16 Hb_005433_050 0.0610087454 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
17 Hb_003188_020 0.0630592908 - - chitinase, putative [Ricinus communis]
18 Hb_003334_080 0.0635331296 - - Reticuline oxidase precursor, putative [Ricinus communis]
19 Hb_106528_020 0.0674562555 - - Cationic peroxidase 2 precursor [Theobroma cacao]
20 Hb_038238_010 0.0680975189 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]

Gene co-expression network

sample Hb_000563_060 Hb_000563_060 Hb_004190_030 Hb_004190_030 Hb_000563_060--Hb_004190_030 Hb_002835_020 Hb_002835_020 Hb_000563_060--Hb_002835_020 Hb_001140_330 Hb_001140_330 Hb_000563_060--Hb_001140_330 Hb_039363_010 Hb_039363_010 Hb_000563_060--Hb_039363_010 Hb_003119_110 Hb_003119_110 Hb_000563_060--Hb_003119_110 Hb_153208_010 Hb_153208_010 Hb_000563_060--Hb_153208_010 Hb_004190_030--Hb_003119_110 Hb_004190_030--Hb_001140_330 Hb_004267_050 Hb_004267_050 Hb_004190_030--Hb_004267_050 Hb_004190_030--Hb_039363_010 Hb_010358_010 Hb_010358_010 Hb_004190_030--Hb_010358_010 Hb_002835_020--Hb_039363_010 Hb_002553_170 Hb_002553_170 Hb_002835_020--Hb_002553_170 Hb_000388_160 Hb_000388_160 Hb_002835_020--Hb_000388_160 Hb_003334_080 Hb_003334_080 Hb_002835_020--Hb_003334_080 Hb_001930_060 Hb_001930_060 Hb_002835_020--Hb_001930_060 Hb_001140_330--Hb_004267_050 Hb_001140_330--Hb_003119_110 Hb_001140_330--Hb_002835_020 Hb_001140_330--Hb_153208_010 Hb_039363_010--Hb_000388_160 Hb_109163_010 Hb_109163_010 Hb_039363_010--Hb_109163_010 Hb_039363_010--Hb_153208_010 Hb_003119_110--Hb_004267_050 Hb_003119_110--Hb_002835_020 Hb_003119_110--Hb_039363_010 Hb_003188_020 Hb_003188_020 Hb_153208_010--Hb_003188_020 Hb_002944_020 Hb_002944_020 Hb_153208_010--Hb_002944_020 Hb_153208_010--Hb_109163_010 Hb_153208_010--Hb_010358_010 Hb_014034_020 Hb_014034_020 Hb_153208_010--Hb_014034_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0240457 21.1976 7.88957 7.72811 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.22056 0.130093 1.90675 1506.72 3.17754

CAGE analysis