Hb_000388_160

Information

Type -
Description -
Location Contig388: 225982-228573
Sequence    

Annotation

kegg
ID pop:POPTR_0011s02990g
description POPTRDRAFT_888987; xyloglucan endo-1 family protein
nr
ID XP_002317310.1
description xyloglucan endo-1 family protein [Populus trichocarpa]
swissprot
ID Q8LG58
description Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2
trembl
ID B9I125
description Xyloglucan endotransglucosylase/hydrolase OS=Populus trichocarpa GN=POPTR_0011s02990g PE=3 SV=1
Gene Ontology
ID GO:0005618
description brassinosteroid-regulated protein bru1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000388_160 0.0 - - xyloglucan endo-1 family protein [Populus trichocarpa]
2 Hb_039363_010 0.0387028226 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
3 Hb_002835_020 0.0427797082 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
4 Hb_000563_060 0.0477781374 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
5 Hb_153208_010 0.0529795465 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
6 Hb_109163_010 0.0567416574 - - polyphenol oxidase [Hevea brasiliensis]
7 Hb_003334_080 0.0611055179 - - Reticuline oxidase precursor, putative [Ricinus communis]
8 Hb_000500_190 0.0621659259 - - hypothetical protein JCGZ_21655 [Jatropha curcas]
9 Hb_004190_030 0.0622914575 - - unnamed protein product [Vitis vinifera]
10 Hb_002553_170 0.0640921643 - - PREDICTED: early nodulin-75-like [Jatropha curcas]
11 Hb_003188_020 0.0641181193 - - chitinase, putative [Ricinus communis]
12 Hb_001140_330 0.0660135812 - - PREDICTED: uncharacterized protein LOC105142675 [Populus euphratica]
13 Hb_000229_080 0.0682400492 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
14 Hb_002944_020 0.0692868502 transcription factor TF Family: bZIP hypothetical protein POPTR_0006s05770g, partial [Populus trichocarpa]
15 Hb_004267_050 0.0725748245 - - hypothetical protein JCGZ_04357 [Jatropha curcas]
16 Hb_005433_050 0.0731963038 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
17 Hb_001930_060 0.074062173 - - PREDICTED: cytochrome P450 71D9-like [Fragaria vesca subsp. vesca]
18 Hb_000563_080 0.0743474964 - - -
19 Hb_001301_020 0.0744104622 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
20 Hb_014034_020 0.0752090576 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_000388_160 Hb_000388_160 Hb_039363_010 Hb_039363_010 Hb_000388_160--Hb_039363_010 Hb_002835_020 Hb_002835_020 Hb_000388_160--Hb_002835_020 Hb_000563_060 Hb_000563_060 Hb_000388_160--Hb_000563_060 Hb_153208_010 Hb_153208_010 Hb_000388_160--Hb_153208_010 Hb_109163_010 Hb_109163_010 Hb_000388_160--Hb_109163_010 Hb_003334_080 Hb_003334_080 Hb_000388_160--Hb_003334_080 Hb_039363_010--Hb_002835_020 Hb_039363_010--Hb_000563_060 Hb_039363_010--Hb_109163_010 Hb_039363_010--Hb_153208_010 Hb_004190_030 Hb_004190_030 Hb_039363_010--Hb_004190_030 Hb_002835_020--Hb_000563_060 Hb_002553_170 Hb_002553_170 Hb_002835_020--Hb_002553_170 Hb_002835_020--Hb_003334_080 Hb_001930_060 Hb_001930_060 Hb_002835_020--Hb_001930_060 Hb_000563_060--Hb_004190_030 Hb_001140_330 Hb_001140_330 Hb_000563_060--Hb_001140_330 Hb_003119_110 Hb_003119_110 Hb_000563_060--Hb_003119_110 Hb_000563_060--Hb_153208_010 Hb_003188_020 Hb_003188_020 Hb_153208_010--Hb_003188_020 Hb_002944_020 Hb_002944_020 Hb_153208_010--Hb_002944_020 Hb_153208_010--Hb_109163_010 Hb_010358_010 Hb_010358_010 Hb_153208_010--Hb_010358_010 Hb_014034_020 Hb_014034_020 Hb_153208_010--Hb_014034_020 Hb_000086_710 Hb_000086_710 Hb_109163_010--Hb_000086_710 Hb_109163_010--Hb_002835_020 Hb_109163_010--Hb_000563_060 Hb_004057_050 Hb_004057_050 Hb_109163_010--Hb_004057_050 Hb_000141_070 Hb_000141_070 Hb_003334_080--Hb_000141_070 Hb_058620_040 Hb_058620_040 Hb_003334_080--Hb_058620_040 Hb_009568_010 Hb_009568_010 Hb_003334_080--Hb_009568_010 Hb_003334_080--Hb_002553_170 Hb_058620_050 Hb_058620_050 Hb_003334_080--Hb_058620_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0663456 0.905682 0.287103 0.526686 0.102405 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 62.7242 0.15103

CAGE analysis