Hb_000086_710

Information

Type -
Description -
Location Contig86: 627616-628943
Sequence    

Annotation

kegg
ID rcu:RCOM_0822300
description leucoanthocyanidin dioxygenase, putative (EC:1.14.11.19)
nr
ID XP_012069285.1
description PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
swissprot
ID Q9LHN8
description Feruloyl CoA ortho-hydroxylase 1 OS=Arabidopsis thaliana GN=F6'H1 PE=1 SV=1
trembl
ID A0A067L108
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24922 PE=3 SV=1
Gene Ontology
ID GO:0046872
description feruloyl ortho-hydroxylase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60789: 627561-628979
cDNA
(Sanger)
(ID:Location)		 001_O07.ab1: 627561-628481

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000086_710 0.0 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
2 Hb_001266_110 0.033936536 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004057_050 0.0358969434 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
4 Hb_003334_020 0.0360282579 - - hypothetical protein CISIN_1g041546mg [Citrus sinensis]
5 Hb_019392_010 0.038610766 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
6 Hb_006925_010 0.0456826752 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
7 Hb_148986_010 0.0471258541 - - unnamed protein product [Vitis vinifera]
8 Hb_109163_010 0.0532581274 - - polyphenol oxidase [Hevea brasiliensis]
9 Hb_000329_160 0.0576450623 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
10 Hb_080238_010 0.0598033817 - - Reticuline oxidase precursor, putative [Ricinus communis]
11 Hb_058620_040 0.0620428138 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
12 Hb_058620_050 0.0621405257 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
13 Hb_000958_180 0.0648480416 - - hypothetical protein CISIN_1g043061mg, partial [Citrus sinensis]
14 Hb_000684_060 0.0652515026 - - hypothetical protein POPTR_0006s13170g [Populus trichocarpa]
15 Hb_003334_080 0.0686983895 - - Reticuline oxidase precursor, putative [Ricinus communis]
16 Hb_036291_010 0.0720174808 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
17 Hb_000109_110 0.0722874562 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
18 Hb_000315_110 0.0727123567 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
19 Hb_009568_010 0.0748781091 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
20 Hb_073973_050 0.0750874565 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]

Gene co-expression network

sample Hb_000086_710 Hb_000086_710 Hb_001266_110 Hb_001266_110 Hb_000086_710--Hb_001266_110 Hb_004057_050 Hb_004057_050 Hb_000086_710--Hb_004057_050 Hb_003334_020 Hb_003334_020 Hb_000086_710--Hb_003334_020 Hb_019392_010 Hb_019392_010 Hb_000086_710--Hb_019392_010 Hb_006925_010 Hb_006925_010 Hb_000086_710--Hb_006925_010 Hb_148986_010 Hb_148986_010 Hb_000086_710--Hb_148986_010 Hb_001266_110--Hb_003334_020 Hb_001266_110--Hb_006925_010 Hb_001266_110--Hb_019392_010 Hb_001266_110--Hb_004057_050 Hb_001266_110--Hb_148986_010 Hb_004057_050--Hb_003334_020 Hb_080238_010 Hb_080238_010 Hb_004057_050--Hb_080238_010 Hb_004057_050--Hb_006925_010 Hb_000329_160 Hb_000329_160 Hb_004057_050--Hb_000329_160 Hb_003334_020--Hb_006925_010 Hb_003334_020--Hb_080238_010 Hb_003334_020--Hb_019392_010 Hb_019392_010--Hb_148986_010 Hb_019392_010--Hb_006925_010 Hb_000958_180 Hb_000958_180 Hb_019392_010--Hb_000958_180 Hb_006925_010--Hb_148986_010 Hb_006925_010--Hb_080238_010 Hb_006925_010--Hb_000329_160 Hb_000684_060 Hb_000684_060 Hb_148986_010--Hb_000684_060 Hb_148986_010--Hb_003334_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0577065 0.235886 0.364584 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 27.749 0

CAGE analysis