Hb_000958_180

Information

Type -
Description -
Location Contig958: 168084-177495
Sequence    

Annotation

kegg
ID pda:103703726
description polygalacturonase-like
nr
ID KDO83432.1
description hypothetical protein CISIN_1g043061mg, partial [Citrus sinensis]
swissprot
ID Q94AJ5
description Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1
trembl
ID A0A067H6T9
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g043061mg PE=3 SV=1
Gene Ontology
ID GO:0005576
description polygalacturonase qrt2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000958_180 0.0 - - hypothetical protein CISIN_1g043061mg, partial [Citrus sinensis]
2 Hb_185391_010 0.0358540837 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
3 Hb_019392_010 0.0495682202 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
4 Hb_001266_110 0.0602060593 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006925_010 0.0647713847 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
6 Hb_000086_710 0.0648480416 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
7 Hb_058620_050 0.0651039839 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
8 Hb_036291_010 0.0660755177 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
9 Hb_148986_010 0.0661846533 - - unnamed protein product [Vitis vinifera]
10 Hb_003334_020 0.0703414749 - - hypothetical protein CISIN_1g041546mg [Citrus sinensis]
11 Hb_058620_040 0.0781257534 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
12 Hb_004057_050 0.0818515013 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
13 Hb_009568_010 0.0869579204 - - hypothetical protein POPTR_0001s46700g [Populus trichocarpa]
14 Hb_001948_020 0.0873189847 - - -
15 Hb_001546_090 0.0907233954 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
16 Hb_000329_160 0.0911259337 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
17 Hb_004693_010 0.0912449719 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
18 Hb_005614_040 0.0913365282 - - unnamed protein product [Coffea canephora]
19 Hb_073973_050 0.0917317656 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
20 Hb_000141_070 0.0929809719 - - l-lactate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000958_180 Hb_000958_180 Hb_185391_010 Hb_185391_010 Hb_000958_180--Hb_185391_010 Hb_019392_010 Hb_019392_010 Hb_000958_180--Hb_019392_010 Hb_001266_110 Hb_001266_110 Hb_000958_180--Hb_001266_110 Hb_006925_010 Hb_006925_010 Hb_000958_180--Hb_006925_010 Hb_000086_710 Hb_000086_710 Hb_000958_180--Hb_000086_710 Hb_058620_050 Hb_058620_050 Hb_000958_180--Hb_058620_050 Hb_015146_010 Hb_015146_010 Hb_185391_010--Hb_015146_010 Hb_185391_010--Hb_019392_010 Hb_185391_010--Hb_058620_050 Hb_148986_010 Hb_148986_010 Hb_185391_010--Hb_148986_010 Hb_005614_040 Hb_005614_040 Hb_185391_010--Hb_005614_040 Hb_019392_010--Hb_148986_010 Hb_019392_010--Hb_000086_710 Hb_019392_010--Hb_006925_010 Hb_019392_010--Hb_001266_110 Hb_003334_020 Hb_003334_020 Hb_019392_010--Hb_003334_020 Hb_001266_110--Hb_003334_020 Hb_001266_110--Hb_000086_710 Hb_001266_110--Hb_006925_010 Hb_004057_050 Hb_004057_050 Hb_001266_110--Hb_004057_050 Hb_001266_110--Hb_148986_010 Hb_006925_010--Hb_148986_010 Hb_006925_010--Hb_003334_020 Hb_080238_010 Hb_080238_010 Hb_006925_010--Hb_080238_010 Hb_000329_160 Hb_000329_160 Hb_006925_010--Hb_000329_160 Hb_000086_710--Hb_004057_050 Hb_000086_710--Hb_003334_020 Hb_000086_710--Hb_006925_010 Hb_000086_710--Hb_148986_010 Hb_058620_040 Hb_058620_040 Hb_058620_050--Hb_058620_040 Hb_000141_070 Hb_000141_070 Hb_058620_050--Hb_000141_070 Hb_003334_080 Hb_003334_080 Hb_058620_050--Hb_003334_080 Hb_004693_010 Hb_004693_010 Hb_058620_050--Hb_004693_010 Hb_009568_010 Hb_009568_010 Hb_058620_050--Hb_009568_010 Hb_007483_040 Hb_007483_040 Hb_058620_050--Hb_007483_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00858453 0.0166796 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.543821 0

CAGE analysis