Hb_003334_020

Information

Type -
Description -
Location Contig3334: 10846-12742
Sequence    

Annotation

kegg
ID crb:CARUB_v10026133mg
description hypothetical protein
nr
ID KDO77600.1
description hypothetical protein CISIN_1g041546mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID M1D3J3
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031325 PE=4 SV=1
Gene Ontology
ID GO:0016491
description reticuline oxidase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003334_020 0.0 - - hypothetical protein CISIN_1g041546mg [Citrus sinensis]
2 Hb_001266_110 0.010839965 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000086_710 0.0360282579 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
4 Hb_004057_050 0.0386075978 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
5 Hb_006925_010 0.040917743 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
6 Hb_080238_010 0.0428913212 - - Reticuline oxidase precursor, putative [Ricinus communis]
7 Hb_019392_010 0.0446993008 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
8 Hb_148986_010 0.046197759 - - unnamed protein product [Vitis vinifera]
9 Hb_000315_110 0.0519610336 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
10 Hb_000684_060 0.0562595596 - - hypothetical protein POPTR_0006s13170g [Populus trichocarpa]
11 Hb_000008_010 0.0572553345 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
12 Hb_001266_090 0.0579554313 - - -
13 Hb_073973_050 0.0590740169 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
14 Hb_036291_010 0.0626753972 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
15 Hb_000329_160 0.0642909919 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
16 Hb_007845_020 0.0643462011 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
17 Hb_090894_010 0.064789309 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
18 Hb_109163_010 0.0682993987 - - polyphenol oxidase [Hevea brasiliensis]
19 Hb_001414_080 0.0690188431 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
20 Hb_000958_180 0.0703414749 - - hypothetical protein CISIN_1g043061mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_003334_020 Hb_003334_020 Hb_001266_110 Hb_001266_110 Hb_003334_020--Hb_001266_110 Hb_000086_710 Hb_000086_710 Hb_003334_020--Hb_000086_710 Hb_004057_050 Hb_004057_050 Hb_003334_020--Hb_004057_050 Hb_006925_010 Hb_006925_010 Hb_003334_020--Hb_006925_010 Hb_080238_010 Hb_080238_010 Hb_003334_020--Hb_080238_010 Hb_019392_010 Hb_019392_010 Hb_003334_020--Hb_019392_010 Hb_001266_110--Hb_000086_710 Hb_001266_110--Hb_006925_010 Hb_001266_110--Hb_019392_010 Hb_001266_110--Hb_004057_050 Hb_148986_010 Hb_148986_010 Hb_001266_110--Hb_148986_010 Hb_000086_710--Hb_004057_050 Hb_000086_710--Hb_019392_010 Hb_000086_710--Hb_006925_010 Hb_000086_710--Hb_148986_010 Hb_004057_050--Hb_080238_010 Hb_004057_050--Hb_006925_010 Hb_000329_160 Hb_000329_160 Hb_004057_050--Hb_000329_160 Hb_006925_010--Hb_148986_010 Hb_006925_010--Hb_019392_010 Hb_006925_010--Hb_080238_010 Hb_006925_010--Hb_000329_160 Hb_001266_090 Hb_001266_090 Hb_080238_010--Hb_001266_090 Hb_000684_060 Hb_000684_060 Hb_080238_010--Hb_000684_060 Hb_080238_010--Hb_001266_110 Hb_019392_010--Hb_148986_010 Hb_000958_180 Hb_000958_180 Hb_019392_010--Hb_000958_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0291493 0.0602127 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.33708 0

CAGE analysis