Hb_000329_160

Information

Type -
Description -
Location Contig329: 92367-94943
Sequence    

Annotation

kegg
ID rcu:RCOM_1611040
description Pectinesterase-2 precursor, putative (EC:3.1.1.11)
nr
ID XP_012083608.1
description PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
swissprot
ID O04887
description Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1
trembl
ID A0A067K938
description Pectinesterase OS=Jatropha curcas GN=JCGZ_14551 PE=3 SV=1
Gene Ontology
ID GO:0005576
description pectinesterase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34501: 92602-92836 , PASA_asmbl_34502: 93140-94407 , PASA_asmbl_34503: 94511-94728
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_160 0.0 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
2 Hb_006925_010 0.0435802844 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
3 Hb_004057_050 0.0493320612 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
4 Hb_019392_010 0.0503035647 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
5 Hb_148986_010 0.0522159394 - - unnamed protein product [Vitis vinifera]
6 Hb_080238_010 0.0532478056 - - Reticuline oxidase precursor, putative [Ricinus communis]
7 Hb_000086_710 0.0576450623 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
8 Hb_000684_060 0.0583807037 - - hypothetical protein POPTR_0006s13170g [Populus trichocarpa]
9 Hb_005120_010 0.0622025407 - - amino acid transporter, putative [Ricinus communis]
10 Hb_058620_040 0.062298141 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
11 Hb_003334_020 0.0642909919 - - hypothetical protein CISIN_1g041546mg [Citrus sinensis]
12 Hb_001266_110 0.0661919985 - - conserved hypothetical protein [Ricinus communis]
13 Hb_058620_050 0.0704597021 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
14 Hb_009026_040 0.070800889 - - pathogenesis-related family protein [Populus trichocarpa]
15 Hb_001040_190 0.0746359893 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2a-like [Jatropha curcas]
16 Hb_003119_110 0.0763671674 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
17 Hb_000563_060 0.0796121488 - - PREDICTED: uncharacterized protein LOC100306381 isoform X1 [Glycine max]
18 Hb_003334_080 0.0797697338 - - Reticuline oxidase precursor, putative [Ricinus communis]
19 Hb_001266_090 0.0812518351 - - -
20 Hb_001948_040 0.0832064975 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl geranyl pyrophosphate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000329_160 Hb_000329_160 Hb_006925_010 Hb_006925_010 Hb_000329_160--Hb_006925_010 Hb_004057_050 Hb_004057_050 Hb_000329_160--Hb_004057_050 Hb_019392_010 Hb_019392_010 Hb_000329_160--Hb_019392_010 Hb_148986_010 Hb_148986_010 Hb_000329_160--Hb_148986_010 Hb_080238_010 Hb_080238_010 Hb_000329_160--Hb_080238_010 Hb_000086_710 Hb_000086_710 Hb_000329_160--Hb_000086_710 Hb_006925_010--Hb_148986_010 Hb_006925_010--Hb_019392_010 Hb_001266_110 Hb_001266_110 Hb_006925_010--Hb_001266_110 Hb_003334_020 Hb_003334_020 Hb_006925_010--Hb_003334_020 Hb_006925_010--Hb_080238_010 Hb_004057_050--Hb_000086_710 Hb_004057_050--Hb_003334_020 Hb_004057_050--Hb_001266_110 Hb_004057_050--Hb_080238_010 Hb_004057_050--Hb_006925_010 Hb_019392_010--Hb_148986_010 Hb_019392_010--Hb_000086_710 Hb_019392_010--Hb_001266_110 Hb_019392_010--Hb_003334_020 Hb_000958_180 Hb_000958_180 Hb_019392_010--Hb_000958_180 Hb_000684_060 Hb_000684_060 Hb_148986_010--Hb_000684_060 Hb_148986_010--Hb_001266_110 Hb_148986_010--Hb_003334_020 Hb_148986_010--Hb_000086_710 Hb_080238_010--Hb_003334_020 Hb_001266_090 Hb_001266_090 Hb_080238_010--Hb_001266_090 Hb_080238_010--Hb_000684_060 Hb_080238_010--Hb_001266_110 Hb_000086_710--Hb_001266_110 Hb_000086_710--Hb_003334_020 Hb_000086_710--Hb_006925_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0184416 0.255436 0.127539 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0377592 19.1541 0.0420692

CAGE analysis