Hb_000684_060

Information

Type -
Description -
Location Contig684: 124595-129856
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13170g
description hypothetical protein
nr
ID XP_006381474.1
description hypothetical protein POPTR_0006s13170g [Populus trichocarpa]
swissprot
ID Q94KB9
description MLO-like protein 3 OS=Arabidopsis thaliana GN=MLO3 PE=2 SV=1
trembl
ID B9MTA4
description MLO-like protein OS=Populus trichocarpa GN=MLO PE=3 SV=1
Gene Ontology
ID GO:0016021
description mlo-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000684_060 0.0 - - hypothetical protein POPTR_0006s13170g [Populus trichocarpa]
2 Hb_148986_010 0.0430337129 - - unnamed protein product [Vitis vinifera]
3 Hb_080238_010 0.0498589757 - - Reticuline oxidase precursor, putative [Ricinus communis]
4 Hb_002929_010 0.0536036837 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
5 Hb_003334_020 0.0562595596 - - hypothetical protein CISIN_1g041546mg [Citrus sinensis]
6 Hb_006925_010 0.0564912433 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
7 Hb_003663_030 0.0566621337 - - PREDICTED: early nodulin-93-like [Jatropha curcas]
8 Hb_000329_160 0.0583807037 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
9 Hb_001266_090 0.0627115808 - - -
10 Hb_001266_110 0.0630436046 - - conserved hypothetical protein [Ricinus communis]
11 Hb_019392_010 0.0651946086 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
12 Hb_000086_710 0.0652515026 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
13 Hb_004057_050 0.0706902864 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
14 Hb_001414_080 0.0751673821 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
15 Hb_000008_010 0.0793557865 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
16 Hb_000008_130 0.0819056264 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
17 Hb_000013_040 0.0819056264 - - -
18 Hb_000013_070 0.0819056264 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_000014_180 0.0819056264 - - PREDICTED: endo-1,4-beta-xylanase D-like [Fragaria vesca subsp. vesca]
20 Hb_000021_080 0.0819056264 - - -

Gene co-expression network

sample Hb_000684_060 Hb_000684_060 Hb_148986_010 Hb_148986_010 Hb_000684_060--Hb_148986_010 Hb_080238_010 Hb_080238_010 Hb_000684_060--Hb_080238_010 Hb_002929_010 Hb_002929_010 Hb_000684_060--Hb_002929_010 Hb_003334_020 Hb_003334_020 Hb_000684_060--Hb_003334_020 Hb_006925_010 Hb_006925_010 Hb_000684_060--Hb_006925_010 Hb_003663_030 Hb_003663_030 Hb_000684_060--Hb_003663_030 Hb_019392_010 Hb_019392_010 Hb_148986_010--Hb_019392_010 Hb_148986_010--Hb_006925_010 Hb_001266_110 Hb_001266_110 Hb_148986_010--Hb_001266_110 Hb_148986_010--Hb_003334_020 Hb_000086_710 Hb_000086_710 Hb_148986_010--Hb_000086_710 Hb_080238_010--Hb_006925_010 Hb_080238_010--Hb_003334_020 Hb_001266_090 Hb_001266_090 Hb_080238_010--Hb_001266_090 Hb_004057_050 Hb_004057_050 Hb_080238_010--Hb_004057_050 Hb_080238_010--Hb_001266_110 Hb_000008_130 Hb_000008_130 Hb_002929_010--Hb_000008_130 Hb_000013_040 Hb_000013_040 Hb_002929_010--Hb_000013_040 Hb_000013_070 Hb_000013_070 Hb_002929_010--Hb_000013_070 Hb_000014_180 Hb_000014_180 Hb_002929_010--Hb_000014_180 Hb_000021_080 Hb_000021_080 Hb_002929_010--Hb_000021_080 Hb_000031_270 Hb_000031_270 Hb_002929_010--Hb_000031_270 Hb_003334_020--Hb_001266_110 Hb_003334_020--Hb_000086_710 Hb_003334_020--Hb_004057_050 Hb_003334_020--Hb_006925_010 Hb_003334_020--Hb_019392_010 Hb_006925_010--Hb_019392_010 Hb_006925_010--Hb_001266_110 Hb_000329_160 Hb_000329_160 Hb_006925_010--Hb_000329_160 Hb_003663_030--Hb_002929_010 Hb_003663_030--Hb_001266_090 Hb_003663_030--Hb_000008_130 Hb_003663_030--Hb_000013_040 Hb_003663_030--Hb_000013_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0424805 0.00805723 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.7344 0

CAGE analysis