Hb_000014_180

Information

Type -
Description -
Location Contig14: 365939-366430
Sequence    

Annotation

kegg
ID fve:101308755
description endo-1,4-beta-xylanase A-like
nr
ID XP_004296033.1
description PREDICTED: endo-1,4-beta-xylanase D-like [Fragaria vesca subsp. vesca]
swissprot
ID -
description -
trembl
ID A0A061E871
description Glycosyl hydrolase family 10 protein OS=Theobroma cacao GN=TCM_007233 PE=4 SV=1
Gene Ontology
ID GO:0016798
description endo- -beta-xylanase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_130 0.0 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
2 Hb_000013_040 0.0 - - -
3 Hb_000013_070 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_000014_180 0.0 - - PREDICTED: endo-1,4-beta-xylanase D-like [Fragaria vesca subsp. vesca]
5 Hb_000021_080 0.0 - - -
6 Hb_000031_270 0.0 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
7 Hb_000035_070 0.0 - - PREDICTED: uncharacterized protein LOC104814513 [Tarenaya hassleriana]
8 Hb_000041_140 0.0 - - -
9 Hb_000043_130 0.0 - - -
10 Hb_000045_240 0.0 - - -
11 Hb_000056_270 0.0 - - Origin recognition complex subunit, putative [Ricinus communis]
12 Hb_000057_150 0.0 - - hypothetical protein EUTSA_v10009202mg [Eutrema salsugineum]
13 Hb_000059_250 0.0 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
14 Hb_000062_160 0.0 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
15 Hb_000068_050 0.0 - - PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]
16 Hb_000073_060 0.0 - - hypothetical protein L484_026849 [Morus notabilis]
17 Hb_000078_150 0.0 - - -
18 Hb_000084_090 0.0 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
19 Hb_000100_250 0.0 - - retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group]
20 Hb_000110_100 0.0 - - -

Gene co-expression network

sample Hb_000008_130 Hb_000008_130 Hb_000013_040 Hb_000013_040 Hb_000008_130--Hb_000013_040 Hb_000013_070 Hb_000013_070 Hb_000008_130--Hb_000013_070 Hb_000014_180 Hb_000014_180 Hb_000008_130--Hb_000014_180 Hb_000021_080 Hb_000021_080 Hb_000008_130--Hb_000021_080 Hb_000031_270 Hb_000031_270 Hb_000008_130--Hb_000031_270 Hb_000035_070 Hb_000035_070 Hb_000008_130--Hb_000035_070 Hb_000008_130--Hb_000013_040 Hb_000008_130--Hb_000013_070 Hb_000008_130--Hb_000014_180 Hb_000008_130--Hb_000021_080 Hb_000008_130--Hb_000031_270 Hb_000008_130--Hb_000035_070 Hb_000008_130--Hb_000013_040 Hb_000008_130--Hb_000013_070 Hb_000008_130--Hb_000014_180 Hb_000008_130--Hb_000021_080 Hb_000008_130--Hb_000031_270 Hb_000008_130--Hb_000035_070 Hb_000008_130--Hb_000013_040 Hb_000008_130--Hb_000013_070 Hb_000008_130--Hb_000014_180 Hb_000008_130--Hb_000021_080 Hb_000008_130--Hb_000031_270 Hb_000008_130--Hb_000035_070 Hb_000008_130--Hb_000013_040 Hb_000008_130--Hb_000013_070 Hb_000008_130--Hb_000014_180 Hb_000008_130--Hb_000021_080 Hb_000008_130--Hb_000031_270 Hb_000008_130--Hb_000035_070 Hb_000008_130--Hb_000013_040 Hb_000008_130--Hb_000013_070 Hb_000008_130--Hb_000014_180 Hb_000008_130--Hb_000021_080 Hb_000008_130--Hb_000031_270 Hb_000008_130--Hb_000035_070 Hb_000008_130--Hb_000013_040 Hb_000008_130--Hb_000013_070 Hb_000008_130--Hb_000014_180 Hb_000008_130--Hb_000021_080 Hb_000008_130--Hb_000031_270 Hb_000008_130--Hb_000035_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.279724 0

CAGE analysis