Hb_004057_050

Information

Type -
Description -
Location Contig4057: 45707-50799
Sequence    

Annotation

kegg
ID rcu:RCOM_0841220
description cytochrome P450, putative (EC:1.14.13.88)
nr
ID XP_012086046.1
description PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
swissprot
ID P37122
description Cytochrome P450 76A2 OS=Solanum melongena GN=CYP76A2 PE=2 SV=1
trembl
ID A0A067K6P0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20024 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 76a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40238: 45581-50807
cDNA
(Sanger)
(ID:Location)		 007_G02.ab1: 47016-50733 , 013_K10.ab1: 47079-50733 , 028_D19.ab1: 47263-50740

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004057_050 0.0 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
2 Hb_000086_710 0.0358969434 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
3 Hb_003334_020 0.0386075978 - - hypothetical protein CISIN_1g041546mg [Citrus sinensis]
4 Hb_001266_110 0.0403246332 - - conserved hypothetical protein [Ricinus communis]
5 Hb_080238_010 0.0466720289 - - Reticuline oxidase precursor, putative [Ricinus communis]
6 Hb_006925_010 0.0487223681 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
7 Hb_000329_160 0.0493320612 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
8 Hb_019392_010 0.0503694929 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
9 Hb_109163_010 0.0562694942 - - polyphenol oxidase [Hevea brasiliensis]
10 Hb_001266_090 0.0606815443 - - -
11 Hb_000315_110 0.0614800867 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
12 Hb_148986_010 0.0635875633 - - unnamed protein product [Vitis vinifera]
13 Hb_000008_010 0.0663229103 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
14 Hb_073973_050 0.0671398482 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
15 Hb_000684_060 0.0706902864 - - hypothetical protein POPTR_0006s13170g [Populus trichocarpa]
16 Hb_036291_010 0.0711628448 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
17 Hb_058620_040 0.0718565382 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]
18 Hb_007845_020 0.0718757326 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
19 Hb_009026_040 0.0721448849 - - pathogenesis-related family protein [Populus trichocarpa]
20 Hb_090894_010 0.0721919244 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]

Gene co-expression network

sample Hb_004057_050 Hb_004057_050 Hb_000086_710 Hb_000086_710 Hb_004057_050--Hb_000086_710 Hb_003334_020 Hb_003334_020 Hb_004057_050--Hb_003334_020 Hb_001266_110 Hb_001266_110 Hb_004057_050--Hb_001266_110 Hb_080238_010 Hb_080238_010 Hb_004057_050--Hb_080238_010 Hb_006925_010 Hb_006925_010 Hb_004057_050--Hb_006925_010 Hb_000329_160 Hb_000329_160 Hb_004057_050--Hb_000329_160 Hb_000086_710--Hb_001266_110 Hb_000086_710--Hb_003334_020 Hb_019392_010 Hb_019392_010 Hb_000086_710--Hb_019392_010 Hb_000086_710--Hb_006925_010 Hb_148986_010 Hb_148986_010 Hb_000086_710--Hb_148986_010 Hb_003334_020--Hb_001266_110 Hb_003334_020--Hb_006925_010 Hb_003334_020--Hb_080238_010 Hb_003334_020--Hb_019392_010 Hb_001266_110--Hb_006925_010 Hb_001266_110--Hb_019392_010 Hb_001266_110--Hb_148986_010 Hb_080238_010--Hb_006925_010 Hb_001266_090 Hb_001266_090 Hb_080238_010--Hb_001266_090 Hb_000684_060 Hb_000684_060 Hb_080238_010--Hb_000684_060 Hb_080238_010--Hb_001266_110 Hb_006925_010--Hb_148986_010 Hb_006925_010--Hb_019392_010 Hb_006925_010--Hb_000329_160 Hb_000329_160--Hb_019392_010 Hb_000329_160--Hb_148986_010 Hb_000329_160--Hb_080238_010 Hb_000329_160--Hb_000086_710
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.48411 1.66944 4.12801 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.318904 357.939 0.266441

CAGE analysis