Hb_001266_090

Information

Type -
Description -
Location Contig1266: 92558-93076
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 034_B23.ab1: 92342-93103 , 037_D06.ab1: 92341-93105 , 048_J11.ab1: 92342-93103

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001266_090 0.0 - - -
2 Hb_001414_080 0.0272337963 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
3 Hb_000008_010 0.0337770191 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
4 Hb_080238_010 0.0452831762 - - Reticuline oxidase precursor, putative [Ricinus communis]
5 Hb_002929_010 0.0454850039 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
6 Hb_000008_130 0.0464888884 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
7 Hb_000013_040 0.0464888884 - - -
8 Hb_000013_070 0.0464888884 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_000014_180 0.0464888884 - - PREDICTED: endo-1,4-beta-xylanase D-like [Fragaria vesca subsp. vesca]
10 Hb_000021_080 0.0464888884 - - -
11 Hb_000031_270 0.0464888884 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
12 Hb_000035_070 0.0464888884 - - PREDICTED: uncharacterized protein LOC104814513 [Tarenaya hassleriana]
13 Hb_000041_140 0.0464888884 - - -
14 Hb_000043_130 0.0464888884 - - -
15 Hb_000045_240 0.0464888884 - - -
16 Hb_000056_270 0.0464888884 - - Origin recognition complex subunit, putative [Ricinus communis]
17 Hb_000057_150 0.0464888884 - - hypothetical protein EUTSA_v10009202mg [Eutrema salsugineum]
18 Hb_000059_250 0.0464888884 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
19 Hb_000062_160 0.0464888884 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
20 Hb_000068_050 0.0464888884 - - PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]

Gene co-expression network

sample Hb_001266_090 Hb_001266_090 Hb_001414_080 Hb_001414_080 Hb_001266_090--Hb_001414_080 Hb_000008_010 Hb_000008_010 Hb_001266_090--Hb_000008_010 Hb_080238_010 Hb_080238_010 Hb_001266_090--Hb_080238_010 Hb_002929_010 Hb_002929_010 Hb_001266_090--Hb_002929_010 Hb_000008_130 Hb_000008_130 Hb_001266_090--Hb_000008_130 Hb_000013_040 Hb_000013_040 Hb_001266_090--Hb_000013_040 Hb_001414_080--Hb_000008_010 Hb_001414_080--Hb_000008_130 Hb_001414_080--Hb_000013_040 Hb_000013_070 Hb_000013_070 Hb_001414_080--Hb_000013_070 Hb_000014_180 Hb_000014_180 Hb_001414_080--Hb_000014_180 Hb_000315_110 Hb_000315_110 Hb_000008_010--Hb_000315_110 Hb_073973_050 Hb_073973_050 Hb_000008_010--Hb_073973_050 Hb_000008_010--Hb_000008_130 Hb_000008_010--Hb_000013_040 Hb_006925_010 Hb_006925_010 Hb_080238_010--Hb_006925_010 Hb_003334_020 Hb_003334_020 Hb_080238_010--Hb_003334_020 Hb_004057_050 Hb_004057_050 Hb_080238_010--Hb_004057_050 Hb_000684_060 Hb_000684_060 Hb_080238_010--Hb_000684_060 Hb_001266_110 Hb_001266_110 Hb_080238_010--Hb_001266_110 Hb_002929_010--Hb_000008_130 Hb_002929_010--Hb_000013_040 Hb_002929_010--Hb_000013_070 Hb_002929_010--Hb_000014_180 Hb_000021_080 Hb_000021_080 Hb_002929_010--Hb_000021_080 Hb_000031_270 Hb_000031_270 Hb_002929_010--Hb_000031_270 Hb_000008_130--Hb_000013_040 Hb_000008_130--Hb_000013_070 Hb_000008_130--Hb_000014_180 Hb_000008_130--Hb_000021_080 Hb_000008_130--Hb_000031_270 Hb_000035_070 Hb_000035_070 Hb_000008_130--Hb_000035_070 Hb_000008_130--Hb_000013_040 Hb_000008_130--Hb_000013_070 Hb_000008_130--Hb_000014_180 Hb_000008_130--Hb_000021_080 Hb_000008_130--Hb_000031_270 Hb_000008_130--Hb_000035_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.223497 2.62845 7.58604 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.33878 2658.94 0.748162

CAGE analysis