Hb_073973_050

Information

Type transcription factor
Description TF Family: GRAS
Location Contig73973: 33053-34537
Sequence    

Annotation

kegg
ID pop:POPTR_0005s15900g
description POPTRDRAFT_862045; hypothetical protein
nr
ID XP_012078195.1
description PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
swissprot
ID Q5NE24
description Nodulation-signaling pathway 2 protein OS=Medicago truncatula GN=NSP2 PE=1 SV=1
trembl
ID A0A067KKJ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12067 PE=4 SV=1
Gene Ontology
ID GO:0003700
description nodulation-signaling pathway 2 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56326: 33356-33842
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073973_050 0.0 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
2 Hb_090894_010 0.0249641552 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
3 Hb_007845_020 0.0301946339 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
4 Hb_000315_110 0.0312513372 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
5 Hb_001948_020 0.0353050251 - - -
6 Hb_036291_010 0.0417117835 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
7 Hb_000008_010 0.0520348166 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
8 Hb_001546_090 0.0542380549 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
9 Hb_001266_110 0.0581677106 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003334_020 0.0590740169 - - hypothetical protein CISIN_1g041546mg [Citrus sinensis]
11 Hb_004057_050 0.0671398482 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
12 Hb_001414_080 0.0722771301 - - PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
13 Hb_000086_710 0.0750874565 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
14 Hb_001266_090 0.0755976696 - - -
15 Hb_080238_010 0.081310591 - - Reticuline oxidase precursor, putative [Ricinus communis]
16 Hb_109163_010 0.0814202308 - - polyphenol oxidase [Hevea brasiliensis]
17 Hb_000699_060 0.0835627386 - - hypothetical protein POPTR_0019s03180g [Populus trichocarpa]
18 Hb_033865_020 0.0848075915 - - -
19 Hb_006925_010 0.0863656172 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
20 Hb_019392_010 0.0871210513 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]

Gene co-expression network

sample Hb_073973_050 Hb_073973_050 Hb_090894_010 Hb_090894_010 Hb_073973_050--Hb_090894_010 Hb_007845_020 Hb_007845_020 Hb_073973_050--Hb_007845_020 Hb_000315_110 Hb_000315_110 Hb_073973_050--Hb_000315_110 Hb_001948_020 Hb_001948_020 Hb_073973_050--Hb_001948_020 Hb_036291_010 Hb_036291_010 Hb_073973_050--Hb_036291_010 Hb_000008_010 Hb_000008_010 Hb_073973_050--Hb_000008_010 Hb_090894_010--Hb_007845_020 Hb_090894_010--Hb_000315_110 Hb_090894_010--Hb_001948_020 Hb_090894_010--Hb_036291_010 Hb_001546_090 Hb_001546_090 Hb_090894_010--Hb_001546_090 Hb_007845_020--Hb_000315_110 Hb_007845_020--Hb_001948_020 Hb_007845_020--Hb_036291_010 Hb_007845_020--Hb_000008_010 Hb_000315_110--Hb_000008_010 Hb_001414_080 Hb_001414_080 Hb_000315_110--Hb_001414_080 Hb_001266_090 Hb_001266_090 Hb_000315_110--Hb_001266_090 Hb_001948_020--Hb_001546_090 Hb_001948_020--Hb_036291_010 Hb_033865_020 Hb_033865_020 Hb_001948_020--Hb_033865_020 Hb_036291_010--Hb_001546_090 Hb_001266_110 Hb_001266_110 Hb_036291_010--Hb_001266_110 Hb_000008_010--Hb_001414_080 Hb_000008_010--Hb_001266_090 Hb_000008_130 Hb_000008_130 Hb_000008_010--Hb_000008_130 Hb_000013_040 Hb_000013_040 Hb_000008_010--Hb_000013_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0305998 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.55782 0

CAGE analysis