Hb_001948_020

Information

Type -
Description -
Location Contig1948: 31549-31878
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001948_020 0.0 - - -
2 Hb_001546_090 0.019136418 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
3 Hb_036291_010 0.0304571119 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
4 Hb_073973_050 0.0353050251 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
5 Hb_090894_010 0.0419422211 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
6 Hb_007845_020 0.0497634515 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
7 Hb_033865_020 0.0502265494 - - -
8 Hb_005066_010 0.0540654014 - - FAD-binding domain-containing family protein [Populus trichocarpa]
9 Hb_000948_040 0.0654843789 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
10 Hb_000315_110 0.0659351922 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
11 Hb_000699_060 0.0691580002 - - hypothetical protein POPTR_0019s03180g [Populus trichocarpa]
12 Hb_001266_110 0.0766944214 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003334_020 0.0815926011 - - hypothetical protein CISIN_1g041546mg [Citrus sinensis]
14 Hb_000008_010 0.0858337943 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
15 Hb_004057_050 0.087219887 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
16 Hb_000958_180 0.0873189847 - - hypothetical protein CISIN_1g043061mg, partial [Citrus sinensis]
17 Hb_000086_710 0.0912885879 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
18 Hb_000205_290 0.0928868456 - - -
19 Hb_000143_010 0.0953976578 - - hypothetical protein JCGZ_16070 [Jatropha curcas]
20 Hb_019392_010 0.099525706 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]

Gene co-expression network

sample Hb_001948_020 Hb_001948_020 Hb_001546_090 Hb_001546_090 Hb_001948_020--Hb_001546_090 Hb_036291_010 Hb_036291_010 Hb_001948_020--Hb_036291_010 Hb_073973_050 Hb_073973_050 Hb_001948_020--Hb_073973_050 Hb_090894_010 Hb_090894_010 Hb_001948_020--Hb_090894_010 Hb_007845_020 Hb_007845_020 Hb_001948_020--Hb_007845_020 Hb_033865_020 Hb_033865_020 Hb_001948_020--Hb_033865_020 Hb_001546_090--Hb_033865_020 Hb_005066_010 Hb_005066_010 Hb_001546_090--Hb_005066_010 Hb_001546_090--Hb_036291_010 Hb_000948_040 Hb_000948_040 Hb_001546_090--Hb_000948_040 Hb_001546_090--Hb_073973_050 Hb_036291_010--Hb_073973_050 Hb_036291_010--Hb_090894_010 Hb_036291_010--Hb_007845_020 Hb_001266_110 Hb_001266_110 Hb_036291_010--Hb_001266_110 Hb_073973_050--Hb_090894_010 Hb_073973_050--Hb_007845_020 Hb_000315_110 Hb_000315_110 Hb_073973_050--Hb_000315_110 Hb_000008_010 Hb_000008_010 Hb_073973_050--Hb_000008_010 Hb_090894_010--Hb_007845_020 Hb_090894_010--Hb_000315_110 Hb_090894_010--Hb_001546_090 Hb_007845_020--Hb_000315_110 Hb_007845_020--Hb_000008_010 Hb_033865_020--Hb_005066_010 Hb_033865_020--Hb_000948_040 Hb_000205_290 Hb_000205_290 Hb_033865_020--Hb_000205_290 Hb_002757_050 Hb_002757_050 Hb_033865_020--Hb_002757_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 1.40045 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 41.8502 0

CAGE analysis