Hb_000205_290

Information

Type -
Description -
Location Contig205: 342381-343915
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21144: 343156-343677
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000205_290 0.0 - - -
2 Hb_002757_050 0.0159273908 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
3 Hb_000671_010 0.0275330777 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
4 Hb_000948_040 0.0278767534 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
5 Hb_011161_060 0.030718073 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
6 Hb_005066_010 0.0393970332 - - FAD-binding domain-containing family protein [Populus trichocarpa]
7 Hb_033865_020 0.0432552442 - - -
8 Hb_000720_010 0.0584295229 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
9 Hb_001546_090 0.0741840965 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
10 Hb_001213_010 0.088198068 - - PREDICTED: laccase-7 [Jatropha curcas]
11 Hb_025490_030 0.0889310161 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
12 Hb_001948_020 0.0928868456 - - -
13 Hb_054102_010 0.0939304984 - - abhydrolase domain containing, putative [Ricinus communis]
14 Hb_126535_010 0.0944823364 - - hypothetical protein JCGZ_09554 [Jatropha curcas]
15 Hb_124247_030 0.0961862328 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
16 Hb_009545_040 0.0972965055 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006153_190 0.0983033069 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
18 Hb_036291_010 0.1032083221 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
19 Hb_000699_060 0.104240925 - - hypothetical protein POPTR_0019s03180g [Populus trichocarpa]
20 Hb_148383_010 0.1065824533 - - PREDICTED: protein YLS9 [Jatropha curcas]

Gene co-expression network

sample Hb_000205_290 Hb_000205_290 Hb_002757_050 Hb_002757_050 Hb_000205_290--Hb_002757_050 Hb_000671_010 Hb_000671_010 Hb_000205_290--Hb_000671_010 Hb_000948_040 Hb_000948_040 Hb_000205_290--Hb_000948_040 Hb_011161_060 Hb_011161_060 Hb_000205_290--Hb_011161_060 Hb_005066_010 Hb_005066_010 Hb_000205_290--Hb_005066_010 Hb_033865_020 Hb_033865_020 Hb_000205_290--Hb_033865_020 Hb_002757_050--Hb_000671_010 Hb_002757_050--Hb_011161_060 Hb_000720_010 Hb_000720_010 Hb_002757_050--Hb_000720_010 Hb_002757_050--Hb_000948_040 Hb_002757_050--Hb_005066_010 Hb_000671_010--Hb_011161_060 Hb_000671_010--Hb_000720_010 Hb_000671_010--Hb_000948_040 Hb_001213_010 Hb_001213_010 Hb_000671_010--Hb_001213_010 Hb_000948_040--Hb_005066_010 Hb_000948_040--Hb_033865_020 Hb_001546_090 Hb_001546_090 Hb_000948_040--Hb_001546_090 Hb_011161_060--Hb_000720_010 Hb_011161_060--Hb_001213_010 Hb_011161_060--Hb_000948_040 Hb_005066_010--Hb_033865_020 Hb_005066_010--Hb_001546_090 Hb_001948_020 Hb_001948_020 Hb_005066_010--Hb_001948_020 Hb_033865_020--Hb_001546_090 Hb_033865_020--Hb_001948_020 Hb_033865_020--Hb_002757_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.171834 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.91198 0

CAGE analysis