Hb_001546_090

Information

Type transcription factor
Description TF Family: MYB
Location Contig1546: 67327-68339
Sequence    

Annotation

kegg
ID tcc:TCM_029126
description Myb domain protein 23
nr
ID XP_012068885.1
description PREDICTED: transcription factor MYB114-like [Jatropha curcas]
swissprot
ID Q9SEI0
description Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1
trembl
ID A0A067KX10
description MYB family protein OS=Jatropha curcas GN=JCGZ_24705 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb114-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001546_090 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
2 Hb_001948_020 0.019136418 - - -
3 Hb_033865_020 0.0312065076 - - -
4 Hb_005066_010 0.0350676231 - - FAD-binding domain-containing family protein [Populus trichocarpa]
5 Hb_036291_010 0.0390996809 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
6 Hb_000948_040 0.0465611227 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
7 Hb_073973_050 0.0542380549 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
8 Hb_090894_010 0.0582764449 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
9 Hb_007845_020 0.0658455107 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
10 Hb_000699_060 0.0679773098 - - hypothetical protein POPTR_0019s03180g [Populus trichocarpa]
11 Hb_000205_290 0.0741840965 - - -
12 Hb_000315_110 0.0843938309 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
13 Hb_002757_050 0.0898680414 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
14 Hb_025490_030 0.0900219157 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
15 Hb_001266_110 0.0906416003 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000958_180 0.0907233954 - - hypothetical protein CISIN_1g043061mg, partial [Citrus sinensis]
17 Hb_003334_020 0.0965784874 - - hypothetical protein CISIN_1g041546mg [Citrus sinensis]
18 Hb_004057_050 0.1012023446 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
19 Hb_000671_010 0.1012596299 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
20 Hb_000143_010 0.1025774871 - - hypothetical protein JCGZ_16070 [Jatropha curcas]

Gene co-expression network

sample Hb_001546_090 Hb_001546_090 Hb_001948_020 Hb_001948_020 Hb_001546_090--Hb_001948_020 Hb_033865_020 Hb_033865_020 Hb_001546_090--Hb_033865_020 Hb_005066_010 Hb_005066_010 Hb_001546_090--Hb_005066_010 Hb_036291_010 Hb_036291_010 Hb_001546_090--Hb_036291_010 Hb_000948_040 Hb_000948_040 Hb_001546_090--Hb_000948_040 Hb_073973_050 Hb_073973_050 Hb_001546_090--Hb_073973_050 Hb_001948_020--Hb_036291_010 Hb_001948_020--Hb_073973_050 Hb_090894_010 Hb_090894_010 Hb_001948_020--Hb_090894_010 Hb_007845_020 Hb_007845_020 Hb_001948_020--Hb_007845_020 Hb_001948_020--Hb_033865_020 Hb_033865_020--Hb_005066_010 Hb_033865_020--Hb_000948_040 Hb_000205_290 Hb_000205_290 Hb_033865_020--Hb_000205_290 Hb_002757_050 Hb_002757_050 Hb_033865_020--Hb_002757_050 Hb_005066_010--Hb_000948_040 Hb_005066_010--Hb_000205_290 Hb_005066_010--Hb_001948_020 Hb_005066_010--Hb_002757_050 Hb_036291_010--Hb_073973_050 Hb_036291_010--Hb_090894_010 Hb_036291_010--Hb_007845_020 Hb_001266_110 Hb_001266_110 Hb_036291_010--Hb_001266_110 Hb_000948_040--Hb_000205_290 Hb_000948_040--Hb_002757_050 Hb_000671_010 Hb_000671_010 Hb_000948_040--Hb_000671_010 Hb_073973_050--Hb_090894_010 Hb_073973_050--Hb_007845_020 Hb_000315_110 Hb_000315_110 Hb_073973_050--Hb_000315_110 Hb_000008_010 Hb_000008_010 Hb_073973_050--Hb_000008_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0327435 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.769139 0

CAGE analysis