Hb_005066_010

Information

Type -
Description -
Location Contig5066: 4507-11210
Sequence    

Annotation

kegg
ID pop:POPTR_0001s43120g
description FAD-binding domain-containing family protein
nr
ID XP_006370482.1
description FAD-binding domain-containing family protein [Populus trichocarpa]
swissprot
ID A6P6W0
description Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1
trembl
ID B9NA97
description FAD-binding domain-containing family protein OS=Populus trichocarpa GN=POPTR_0001s43120g PE=4 SV=1
Gene Ontology
ID GO:0008762
description cannabidiolic acid synthase-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005066_010 0.0 - - FAD-binding domain-containing family protein [Populus trichocarpa]
2 Hb_033865_020 0.0038745988 - - -
3 Hb_000948_040 0.011550301 - - PREDICTED: germin-like protein subfamily 1 member 13 [Jatropha curcas]
4 Hb_001546_090 0.0350676231 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
5 Hb_000205_290 0.0393970332 - - -
6 Hb_001948_020 0.0540654014 - - -
7 Hb_002757_050 0.0552524846 - - PREDICTED: O-acyltransferase WSD1-like isoform X1 [Populus euphratica]
8 Hb_000671_010 0.066784802 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
9 Hb_036291_010 0.067115274 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
10 Hb_011161_060 0.0699468715 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
11 Hb_000699_060 0.0788285595 - - hypothetical protein POPTR_0019s03180g [Populus trichocarpa]
12 Hb_025490_030 0.081484229 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]
13 Hb_073973_050 0.0885702919 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein [Jatropha curcas]
14 Hb_090894_010 0.0905338475 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
15 Hb_000720_010 0.0974147317 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
16 Hb_007845_020 0.0975682759 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
17 Hb_000958_180 0.1058327023 - - hypothetical protein CISIN_1g043061mg, partial [Citrus sinensis]
18 Hb_124247_030 0.1068935446 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Jatropha curcas]
19 Hb_001165_040 0.1073924136 - - hypothetical protein POPTR_0009s10120g [Populus trichocarpa]
20 Hb_009545_040 0.108719559 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005066_010 Hb_005066_010 Hb_033865_020 Hb_033865_020 Hb_005066_010--Hb_033865_020 Hb_000948_040 Hb_000948_040 Hb_005066_010--Hb_000948_040 Hb_001546_090 Hb_001546_090 Hb_005066_010--Hb_001546_090 Hb_000205_290 Hb_000205_290 Hb_005066_010--Hb_000205_290 Hb_001948_020 Hb_001948_020 Hb_005066_010--Hb_001948_020 Hb_002757_050 Hb_002757_050 Hb_005066_010--Hb_002757_050 Hb_033865_020--Hb_000948_040 Hb_033865_020--Hb_001546_090 Hb_033865_020--Hb_000205_290 Hb_033865_020--Hb_001948_020 Hb_033865_020--Hb_002757_050 Hb_000948_040--Hb_000205_290 Hb_000948_040--Hb_002757_050 Hb_000948_040--Hb_001546_090 Hb_000671_010 Hb_000671_010 Hb_000948_040--Hb_000671_010 Hb_001546_090--Hb_001948_020 Hb_036291_010 Hb_036291_010 Hb_001546_090--Hb_036291_010 Hb_073973_050 Hb_073973_050 Hb_001546_090--Hb_073973_050 Hb_000205_290--Hb_002757_050 Hb_000205_290--Hb_000671_010 Hb_011161_060 Hb_011161_060 Hb_000205_290--Hb_011161_060 Hb_001948_020--Hb_036291_010 Hb_001948_020--Hb_073973_050 Hb_090894_010 Hb_090894_010 Hb_001948_020--Hb_090894_010 Hb_007845_020 Hb_007845_020 Hb_001948_020--Hb_007845_020 Hb_002757_050--Hb_000671_010 Hb_002757_050--Hb_011161_060 Hb_000720_010 Hb_000720_010 Hb_002757_050--Hb_000720_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0601705 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.964033 0

CAGE analysis